Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M12
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   5.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   7.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   7.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 347  QHMLESMQQRAVDDNICKSN 288
            Q + ESM+ +A+ D +C+++
Sbjct: 1317 QQIPESMRSKALIDQLCRNS 1336


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 118 EAHCNTRACVARSP 77
           E H    +C+ARSP
Sbjct: 73  EVHAQVYSCLARSP 86


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -3

Query: 110 LQHTCLCCQVS 78
           ++ +C+CCQ S
Sbjct: 71  MERSCMCCQES 81


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 93  QARVLQWASW 122
           Q  VL+WASW
Sbjct: 143 QRCVLKWASW 152


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 3/13 (23%), Positives = 11/13 (84%)
 Frame = +3

Query: 99  RVLQWASWADSEL 137
           ++++W +W++ +L
Sbjct: 384 KIIRWCTWSEGDL 396


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 3/13 (23%), Positives = 11/13 (84%)
 Frame = +3

Query: 99  RVLQWASWADSEL 137
           ++++W +W++ +L
Sbjct: 384 KIIRWCTWSEGDL 396


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 3/13 (23%), Positives = 11/13 (84%)
 Frame = +3

Query: 99  RVLQWASWADSEL 137
           ++++W +W++ +L
Sbjct: 384 KIIRWCTWSEGDL 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,365
Number of Sequences: 438
Number of extensions: 2173
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)