Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M11
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   107   6e-25
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   106   1e-24
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   3.9  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  107 bits (258), Expect = 6e-25
 Identities = 57/109 (52%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
 Frame = +1

Query: 31  PGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGKENAKPRYKAPKI 207
           PGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEGK   KP  KAPKI
Sbjct: 122 PGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKI 178

Query: 208 QRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRKKESKVRRQ 354
           QRLVTP  LQ                    A++A+L+A+R  E+K +R+
Sbjct: 179 QRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKRE 227


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  106 bits (255), Expect = 1e-24
 Identities = 56/109 (51%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
 Frame = +1

Query: 31  PGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR-LLPAKEGKENAKPRYKAPKI 207
           PGLTD  VP+RLGPKRASKIR+ FNL KEDDVR++V++R ++P KEGK   KP  KAPKI
Sbjct: 122 PGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKI 178

Query: 208 QRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRKKESKVRRQ 354
           QRLVTP  LQ                    A++A+L+A+R  E+K +++
Sbjct: 179 QRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKE 227


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 82  THAWDLDGGELHRQSVQDFLAPLRT 8
           T  WDL GGE + + +Q ++ P  T
Sbjct: 861 TSEWDLKGGEEYVELMQQYVRPSLT 885


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,146
Number of Sequences: 5004
Number of extensions: 24872
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)