Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M11
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    24   0.64 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   4.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.5  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 16  KVPGNPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 147
           +V  + G  +G  P    P+ A    +L  LK+E    RY+ +R
Sbjct: 5   RVKRSDGRGNGGTPEEKRPRTAFSGEQLARLKREFAENRYLTER 48


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 55  PRRLGPKRASKIRKLFNLKKEDDVRRYVVKR 147
           P    P+ A    +L  LK+E    RY+ +R
Sbjct: 18  PEEKRPRTAFSAEQLARLKREFAENRYLTER 48


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 320 HRERRNPRSAVKKRSNAGVRLQCVTLRALATVRRKSD 430
           +  R+     +KK    G+R +CV       V+RK +
Sbjct: 234 YMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEE 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,122
Number of Sequences: 438
Number of extensions: 1485
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)