Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M08
(526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 158 3e-39
AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical ... 28 3.6
Z81470-4|CAB03879.1| 550|Caenorhabditis elegans Hypothetical pr... 28 4.7
AC006631-2|AAL02500.1| 142|Caenorhabditis elegans Hypothetical ... 28 4.7
Z82095-7|CAN86628.1| 390|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z82095-6|CAI79281.2| 412|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z82095-5|CAB05026.2| 414|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 8.2
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 8.2
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 8.2
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 8.2
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 158 bits (383), Expect = 3e-39
Identities = 72/143 (50%), Positives = 102/143 (71%)
Frame = +2
Query: 95 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 274
+KK+P VPE+V Q + + + +K+ + FKRAE+YV+EYR +++
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63
Query: 275 EIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFGRLNK 454
+RL R+A +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVF +LNK
Sbjct: 64 GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123
Query: 455 ATVNMLRIAEPYIAWGYPNLKSV 523
AT+ +LRI EPY+AWGYPN K++
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTI 146
>AF016672-5|AAB66120.1| 951|Caenorhabditis elegans Hypothetical
protein F56D12.6b protein.
Length = 951
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/108 (17%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +2
Query: 176 ITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKL-AFVI 352
++LK ++KK +E Q+VKE E + ++ ++ N+ ++Y+ + + A +
Sbjct: 1 MSLKVLQENLKKSEETVAEVAQFVKERLSVEDEYVKAINRSVNKVSHYIQNGSSIDAMWL 60
Query: 353 RIRGVNQVSPKVRKVLQLFRLRQINNGVFGRLNKATVNMLRIAEPYIA 496
+G ++ ++ V+ + L+ ++ V + +P +A
Sbjct: 61 LTKGTMELMAEIH-VMLVKNLQDLSREVLKYKEDVNRTRKELKQPQVA 107
>Z81470-4|CAB03879.1| 550|Caenorhabditis elegans Hypothetical
protein C14A6.5 protein.
Length = 550
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 314 YYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFGR 445
Y+VP + +R + + P+V+ + FR ++ N VFG+
Sbjct: 148 YFVPTAHQAILNLRNSDLEGLDPEVKDTVMYFRNIEMENAVFGK 191
>AC006631-2|AAL02500.1| 142|Caenorhabditis elegans Hypothetical
protein F27B3.7 protein.
Length = 142
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +3
Query: 192 VPLPLRRGK-----KSLREPNNMSKNTASRSVMKSD 284
+PL +RR KS+ +P N+ NTA ++M SD
Sbjct: 25 IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60
>Z82095-7|CAN86628.1| 390|Caenorhabditis elegans Hypothetical
protein ZK849.2c protein.
Length = 390
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 174 RSHSRGVPLPLRRGKKSLREPNNMSKN 254
R +++G+ PLR KSLR+ N + K+
Sbjct: 233 RGNTKGLTAPLRHNFKSLRKRNGVGKS 259
>Z82095-6|CAI79281.2| 412|Caenorhabditis elegans Hypothetical
protein ZK849.2b protein.
Length = 412
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 174 RSHSRGVPLPLRRGKKSLREPNNMSKN 254
R +++G+ PLR KSLR+ N + K+
Sbjct: 255 RGNTKGLTAPLRHNFKSLRKRNGVGKS 281
>Z82095-5|CAB05026.2| 414|Caenorhabditis elegans Hypothetical
protein ZK849.2a protein.
Length = 414
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 174 RSHSRGVPLPLRRGKKSLREPNNMSKN 254
R +++G+ PLR KSLR+ N + K+
Sbjct: 257 RGNTKGLTAPLRHNFKSLRKRNGVGKS 283
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.1 bits (57), Expect = 8.2
Identities = 21/85 (24%), Positives = 34/85 (40%)
Frame = +2
Query: 254 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNG 433
YR+ + E ++ ++ Y P E +V+++R NQV Q RQ G
Sbjct: 1853 YRVGNQPE-KVLTVPGDQTEYTFPAEPNQRWVVKLRATNQVGSSQWSPEQSITTRQ---G 1908
Query: 434 VFGRLNKATVNMLRIAEPYIAWGYP 508
G + V L E ++ W P
Sbjct: 1909 APGSVRDLRVKALSPNEVHVQWLAP 1933
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.1 bits (57), Expect = 8.2
Identities = 21/85 (24%), Positives = 34/85 (40%)
Frame = +2
Query: 254 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNG 433
YR+ + E ++ ++ Y P E +V+++R NQV Q RQ G
Sbjct: 1853 YRVGNQPE-KVLTVPGDQTEYTFPAEPNQRWVVKLRATNQVGSSQWSPEQSITTRQ---G 1908
Query: 434 VFGRLNKATVNMLRIAEPYIAWGYP 508
G + V L E ++ W P
Sbjct: 1909 APGSVRDLRVKALSPNEVHVQWLAP 1933
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.1 bits (57), Expect = 8.2
Identities = 21/85 (24%), Positives = 34/85 (40%)
Frame = +2
Query: 254 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNG 433
YR+ + E ++ ++ Y P E +V+++R NQV Q RQ G
Sbjct: 1853 YRVGNQPE-KVLTVPGDQTEYTFPAEPNQRWVVKLRATNQVGSSQWSPEQSITTRQ---G 1908
Query: 434 VFGRLNKATVNMLRIAEPYIAWGYP 508
G + V L E ++ W P
Sbjct: 1909 APGSVRDLRVKALSPNEVHVQWLAP 1933
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.1 bits (57), Expect = 8.2
Identities = 21/85 (24%), Positives = 34/85 (40%)
Frame = +2
Query: 254 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNG 433
YR+ + E ++ ++ Y P E +V+++R NQV Q RQ G
Sbjct: 1853 YRVGNQPE-KVLTVPGDQTEYTFPAEPNQRWVVKLRATNQVGSSQWSPEQSITTRQ---G 1908
Query: 434 VFGRLNKATVNMLRIAEPYIAWGYP 508
G + V L E ++ W P
Sbjct: 1909 APGSVRDLRVKALSPNEVHVQWLAP 1933
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,777,099
Number of Sequences: 27780
Number of extensions: 229867
Number of successful extensions: 780
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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