Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M06
(333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 127 5e-31
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 127 5e-31
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 29 0.19
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 27 0.75
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 0.99
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 2.3
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 25 3.0
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 4.0
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 25 4.0
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 5.3
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 24 5.3
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 24 5.3
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 24 5.3
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 24 7.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 24 7.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 24 7.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 24 7.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 24 7.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 24 7.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 24 7.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 24 7.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 24 7.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 24 7.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 24 7.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 24 7.0
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 23 9.2
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 23 9.2
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 23 9.2
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 23 9.2
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 23 9.2
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 23 9.2
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 127 bits (306), Expect = 5e-31
Identities = 59/93 (63%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Frame = +3
Query: 57 KIGINGFGRIGRLVLR-ASIDKGADVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD 233
K+GINGFGRIGR+VLR A + K VVAINDPFI L+YM Y+F+YDSTHGRF G+VE D
Sbjct: 5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKD 64
Query: 234 GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVE 332
G LV++G I V +ERDP I W +GA+YV+E
Sbjct: 65 GKLVIDGNAIDVHNERDPADIKWSTSGADYVIE 97
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 127 bits (306), Expect = 5e-31
Identities = 59/93 (63%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Frame = +3
Query: 57 KIGINGFGRIGRLVLRASIDKGA-DVVAINDPFIGLDYMVYLFQYDSTHGRFKGTVEAVD 233
K+GINGFGRIGR+VLR +I G VVA+NDPFI LDYM Y+F+YDSTHGRF+G+VE
Sbjct: 5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFEGSVETKG 64
Query: 234 GHLVVNGKKIAVFSERDPHAIPWGQAGAEYVVE 332
G LV++G I V +ERDP I W +GAEYV+E
Sbjct: 65 GKLVIDGHSIDVHNERDPANIKWSASGAEYVIE 97
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 29.1 bits (62), Expect = 0.19
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 30 KYTLTIIMSKIGINGFGRIGRLVLRASIDKGADVVAINDPF----IGLDYMVYLFQYDST 197
KY L +S + G GR+ L++ SI K D + PF + Y++ Q D
Sbjct: 627 KYKLDSCVSTLTRMGLGRVSTLLVTDSISKCIDEITKASPFADHPAAMQYIMNAAQ-DIL 685
Query: 198 HGRFKGTVEAVD 233
RF T E V+
Sbjct: 686 RRRFHATSEQVE 697
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 0.75
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 64 ELTVLVASVAWCSVLRLIRV 123
+L+V VA +AWC RL+R+
Sbjct: 122 KLSVAVAELAWCPKSRLVRI 141
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 0.99
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -2
Query: 257 LSVYDEVSIYGLNGTLETTVSRIILEKV 174
L + V++ G NG +TT+ ++ILEKV
Sbjct: 617 LDLKSRVALVGPNGAGKTTLIKLILEKV 644
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 2.3
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = -1
Query: 288 GDPSQRTQL--SSFRLRRGVHLRPQRY 214
G P++R L +F +RRGVHL+ +Y
Sbjct: 163 GIPTKRKDLFPCNFFIRRGVHLKVNKY 189
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 3.0
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Frame = +3
Query: 30 KYTLTIIMS----KIGINGFGRIGRLVLRASIDKGADVVAINDPFIGLD------YMVYL 179
+Y +TI + ++ +N F +G+L++ + D+ D+ ND ++ YM Y+
Sbjct: 508 RYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQE-NDENAFMNCMAEACYMPYI 566
Query: 180 FQYDSTHGRFKG 215
FQ + FKG
Sbjct: 567 FQCRAKQDNFKG 578
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.6 bits (51), Expect = 4.0
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -2
Query: 332 FNNVFSTSLTPWNSMGIPLREHSYLLSVYDEVSIYGLNGTLETTVSRIILEKVDHVVKTN 153
+N + +NS+ R S L + E I+ ++ TLE+ S + DHV K
Sbjct: 684 YNTIMEVWNIKYNSLNALARLLSALYKFHPEFCIHVIDDTLESLFSAV--NNSDHVEK-Q 740
Query: 152 ERIIDSNNIGTL 117
+R+ + I L
Sbjct: 741 KRLAQARFISEL 752
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 24.6 bits (51), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 317 STSLTPWNSMGIPLREHSYLLSVYDEVSI 231
S S +S +PLREH L +VY +V +
Sbjct: 50 SLSSVDVSSPSLPLREHLPLKNVYSQVPL 78
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.2 bits (50), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 293 SMGIPLREHSYLLSVYDEVSIY 228
S G+PL + LLS+Y+ IY
Sbjct: 648 SKGVPLLVRNVLLSIYENKIIY 669
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 132 QHRHPYQSKHGAPGDR 85
QH PY S +G PG R
Sbjct: 208 QHHSPYPSDNGFPGHR 223
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 24.2 bits (50), Expect = 5.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 283 SLSENTAIFFPFTTRCPSTASTV 215
++S ++ I PFT+ PST ST+
Sbjct: 140 NVSNSSQILSPFTSLLPSTLSTL 162
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.2 bits (50), Expect = 5.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 126 DVVAINDPFIGLDYMVYLFQY 188
D++ + P++ DY V LF+Y
Sbjct: 677 DLLIVISPYLNQDYAVTLFEY 697
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 167 HGLPFPV*FDSRSFQGY 217
H PFPV D F+GY
Sbjct: 46 HDKPFPVKLDDSVFEGY 62
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 7.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLINRSTEHQATDATKTVN 66
LEK H + N ID ++IGT+++ EH+ + +N
Sbjct: 1254 LEKYRHNSELNYATIDESDIGTILH-ILEHKNREQVLYLN 1292
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 317 STSLTPWNSMGIPLREHSYLLS 252
S S TP++ +PL +SY LS
Sbjct: 33 SASSTPYSPQQVPLTHNSYPLS 54
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 71 VNSDFRHDYGKSIFSQRSHSTP 6
+N D R D+G + S + STP
Sbjct: 127 LNKDMRRDFGMTSMSSITSSTP 148
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 119 LINRSTEHQATDATKTVNSDFRHDYGKSIFSQRSHS 12
LI + +HQ+T+ TKT + H+ ++ + S
Sbjct: 11 LIESTIKHQSTNYTKTETATTSHEVSENANEHKGKS 46
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 137 SNNIGTLINRSTEHQATDATK 75
+NNI L N T+H+A D K
Sbjct: 743 NNNISELSNSRTKHRAKDDPK 763
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 23.4 bits (48), Expect = 9.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 8 ALSDFVAKIYSYHNHVENRN 67
AL V IYS+HN +E+ N
Sbjct: 83 ALDALVYPIYSHHNILEHEN 102
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -2
Query: 185 LEKVDHVVKTNERIIDSNNIGTLIN 111
L K+D V +TNER+ +++I +LI+
Sbjct: 1100 LAKLDIVKETNERLSTADSILSLID 1124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,068
Number of Sequences: 5004
Number of extensions: 24878
Number of successful extensions: 106
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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