Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M06
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   6.8  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              20   9.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   9.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   9.1  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = -2

Query: 332 FNNVFSTSLTPWNSMGIPLREHSYLLSVYDEVSIYGLNGTLETTVSRIILEKV 174
           FN +   ++  WNS+     E+  +++ +DE  I+  +  +   +  II +++
Sbjct: 330 FNLIDQNAVGCWNSLLPYSPENQAVVARHDEAMIFPADVKINRGLXWIISDRM 382


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 231 DGHLVVNGKKIAVFSE 278
           DG++ V  +K+ +FSE
Sbjct: 49  DGNIDVEDEKVQLFSE 64


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = -2

Query: 101 EHQATDATKTVNSDFRHDYGKSIFSQRSHST 9
           +HQ     + +NSD +  +G     Q   S+
Sbjct: 257 QHQPVTVNRQLNSDVQPGHGSPPVKQHRSSS 287


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 51  MSKIGINGFGRI 86
           ++ +G+ GFGR+
Sbjct: 370 LATLGVGGFGRV 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,628
Number of Sequences: 438
Number of extensions: 1740
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)