Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M05
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    29   0.47 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   1.1  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    27   1.1  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.4  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   4.4  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    25   4.4  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   4.4  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   5.8  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    25   7.6  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    25   7.6  

>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 28.7 bits (61), Expect = 0.47
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 308 IANIFGRDLCPAVGVDIFRLI 246
           IANI GR+LC  V  DI++L+
Sbjct: 130 IANIGGRELCETVYYDIYKLL 150


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 10  INYIIILRFKYFIIYKLFLWARWNEKLDISLYGRYKIME 126
           ++Y   +RF YF +Y L LW     KL   LY  Y I +
Sbjct: 433 LSYASRVRFDYFFLYDLKLWKSLRYKLQ-ELYLGYFITQ 470


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 357 RILNYCSSFEKKNNPSHCEYFWARP 283
           R++NY    +KK+ P+  + FW  P
Sbjct: 270 RVINYSRKTKKKSIPAETDSFWKEP 294


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 16  YIIILRFKYFIIYKLFLWARWNEKLDIS 99
           Y+  +   ++IIY L++W    E LD+S
Sbjct: 314 YVFYITSTFWIIYLLYVWLILPESLDVS 341


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 16  YIIILRFKYFIIYKLFLWARWN 81
           Y +I    +F+I ++F  ARWN
Sbjct: 576 YSVISLVAFFVIVQIFCLARWN 597


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 429 LILNLIKMTSHKFHDLPAPPLF 364
           +IL L+K   HKF +L +P +F
Sbjct: 374 MILPLVKQYDHKFRNLYSPNIF 395


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = +1

Query: 10  INYIIILRFKYFIIYKLFLWARWNEKLDISLYGRYKIME 126
           +N + I  F   ++YK  +W   +  L   ++G Y  ++
Sbjct: 187 VNCVAIYSFLSIVVYKFGVWKALSVYLGAGVFGNYVALQ 225


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 7/25 (28%), Positives = 20/25 (80%)
 Frame = +1

Query: 223 KEYLKKKPINRKMSTPTAGHRSRPK 297
           +EY+++  ++R++++ T G+R +P+
Sbjct: 342 REYVEENSLSRRVTSATWGNRQKPE 366


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 442 KVDISYFEPHKN 407
           K DI YFEPH N
Sbjct: 298 KQDIGYFEPHTN 309


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 171 IYGWALIQFSLPVSALHNFVTTVQ 100
           +  + L Q S P SALH F T +Q
Sbjct: 243 LIAFTLAQRSGPTSALHKFATALQ 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,869
Number of Sequences: 5004
Number of extensions: 43054
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)