Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M05
         (468 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991...    29   2.5  
10_08_0668 + 19737875-19738073,19738157-19738304,19738315-197384...    28   3.3  
03_01_0587 - 4349150-4350115                                           27   5.7  
07_01_0431 + 3283252-3283274,3283684-3283819,3285839-3286682,328...    27   7.5  
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350...    27   7.5  
10_08_0539 - 18631670-18631893,18632008-18632254,18633775-18634014     27   10.0 
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429...    27   10.0 

>12_02_0692 - 22197582-22198214,22198761-22198935,22199089-22199185,
            22199359-22199473,22199546-22199633,22199972-22200063,
            22200138-22200629,22201025-22201048,22201348-22203489
          Length = 1285

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +1

Query: 82   EKLDISLYGRYKIMESRDWQGELN*GPSINYFTS*GGANCDNGWKVSKEYLKKKPINRKM 261
            +KLD++  G+ K   + +  G     P++N     GG    +G   +      K +NR  
Sbjct: 1189 QKLDVAGKGKAKAAAAAE-AGPSGASPAVNG----GGKRAADGSARATARSVLKEVNRNT 1243

Query: 262  STPTAGHRSRPKIFAMTGV 318
             TP     S PK+ +M GV
Sbjct: 1244 PTPPLNSMSVPKVRSMLGV 1262


>10_08_0668 +
           19737875-19738073,19738157-19738304,19738315-19738453,
           19738521-19738664,19739502-19739561,19740058-19740190,
           19740669-19740865
          Length = 339

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 295 LGETYVQRWAWTSFG*LVFFLNILLTPS 212
           L E+Y+ RW    FG LV  LN LL+PS
Sbjct: 71  LDESYLPRWIGLGFGALV-LLNHLLSPS 97


>03_01_0587 - 4349150-4350115
          Length = 321

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 235 KKKPINRKMSTPTAGHRSRP 294
           KK  + R+ +TP AG R+RP
Sbjct: 71  KKAAVRRRRATPAAGRRARP 90


>07_01_0431 +
           3283252-3283274,3283684-3283819,3285839-3286682,
           3286785-3286856,3286906-3286937,3287020-3287433
          Length = 506

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 190 GANCDNGWKVSKEYLKK 240
           G NC NG++V+ EYL K
Sbjct: 449 GLNCLNGYRVAMEYLSK 465


>03_06_0769 +
           36134298-36134356,36134740-36134919,36134975-36135007,
           36135008-36135128,36135227-36135266,36135811-36135863,
           36135937-36135998,36136354-36136506,36136949-36137160,
           36137480-36138972,36140560-36141483,36141734-36142043,
           36143818-36143874,36144114-36144167,36144452-36144510
          Length = 1269

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 35  LSTLLFTNCFCGRVGTKNSISVCTVVTKLWRA--ETGK 142
           +  L F   F  R G    +  CT  T+LWR   ETG+
Sbjct: 215 IDNLGFLITFADRFGASRLMKACTQFTELWRRKHETGQ 252


>10_08_0539 - 18631670-18631893,18632008-18632254,18633775-18634014
          Length = 236

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 186 LTCEVIYGWALIQFSLPVSALHNFVTTVQTDIEFFVPTRPQKQFVNNKV 40
           L C V+  WA+   S PV A    +  + T+     P R ++ FV N +
Sbjct: 58  LACGVLAAWAVASSSSPVIAASQRLPPLSTE-----PNRCERAFVGNTI 101


>02_03_0084 -
           15041261-15041437,15041625-15041765,15042857-15042946,
           15043111-15043201,15043953-15044155,15045361-15045438,
           15045535-15045651,15046111-15046161,15046405-15046500,
           15046726-15046742,15046938-15047064,15050585-15050681,
           15051565-15051638,15051910-15051993,15052099-15052290,
           15054191-15054319,15055607-15055639,15055747-15055843,
           15055940-15055990,15057494-15057564,15058305-15058455,
           15058625-15058703,15059265-15059346,15060335-15060335,
           15060565-15060620,15060969-15061018,15061511-15061580
          Length = 834

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 138 ARRTELRPIHKLLHKLRR 191
           A R+ELR +HKL  KL+R
Sbjct: 695 ATRSELRAVHKLTSKLKR 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,893,178
Number of Sequences: 37544
Number of extensions: 263455
Number of successful extensions: 460
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)