Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M05
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin monoox...    28   2.9  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   5.1  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   5.1  

>Z70286-2|CAA94290.1|  529|Caenorhabditis elegans Hypothetical
           protein K08C7.5 protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
 Frame = +1

Query: 4   RGINYIIILRFKYFIIYKLFLWA--------RWNEKLDISLYG 108
           RG+ + II+  ++F +YKLF  A        R N+++D  LYG
Sbjct: 227 RGLPFDIIMNTRFFSLYKLFPQAMLNSLVEYRINQRIDHDLYG 269


>AJ582071-1|CAE46541.1|  529|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
 Frame = +1

Query: 4   RGINYIIILRFKYFIIYKLFLWA--------RWNEKLDISLYG 108
           RG+ + II+  ++F +YKLF  A        R N+++D  LYG
Sbjct: 227 RGLPFDIIMNTRFFSLYKLFPQAMLNSLVEYRINQRIDHDLYG 269


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 220 SKEYLKKKPINRKMSTPTAGHRSRPK 297
           S+EY KK P+  K    T GH SRP+
Sbjct: 83  SEEY-KKDPLESKAPLSTFGHSSRPR 107


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 220 SKEYLKKKPINRKMSTPTAGHRSRPK 297
           S+EY KK P+  K    T GH SRP+
Sbjct: 83  SEEY-KKDPLESKAPLSTFGHSSRPR 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,423,880
Number of Sequences: 27780
Number of extensions: 242440
Number of successful extensions: 578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)