Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M04
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   2.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   3.7  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   4.9  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    24   6.4  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    24   6.4  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    24   8.5  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    24   8.5  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    24   8.5  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    24   8.5  

>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 130 VLGIVKDCVDDDVYMCLKEKVL 195
           V+  VK+ +DDD+Y  LKEK+L
Sbjct: 107 VVNCVKE-IDDDLYNTLKEKLL 127


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = -1

Query: 248 TPSIKVISLFDLKVSAYFKTFSLRHIYTSSSTQSLTMPKTL-----PPIPRSVDS 99
           +PS    S      S+ F+ FS R     SST +L +   L     PP PR+  S
Sbjct: 584 SPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTLQISAPLETSQSPPTPRTKPS 638


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 134  WALLRTVSTMTCICASRRRF 193
            W L +TV +M CI A +R F
Sbjct: 1702 WCLAKTVLSMLCIIAIQRFF 1721


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
 Frame = -1

Query: 326 ASLAFGSSDSGSKARADIGEPLLSKVTPSI---KVISLFDLKVSAYFKTFSLRHIYTSSS 156
           A L  GS  SG       G+PL   +TP     KV   +  ++   FK  S+  + +  +
Sbjct: 41  AELWMGSHPSGPSFVMQTGKPLSELLTPETVGEKVYKKYGKQLPFLFKVLSINKVLSIQA 100

Query: 155 TQSLTMPKTL 126
                + K L
Sbjct: 101 HPDKPLGKQL 110


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 241 DGVTLESKGSPMSARALEPLSDEPKAREAQVESR 342
           D V+  S+ +  S   + P+SD+PK   ++ E+R
Sbjct: 167 DVVSPSSELNAQSVNNILPISDDPKDSTSEAETR 200


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 246 TINQSYLPLRPQSLCIFQNLLLEAHIHVIVDTVLNNAQN 130
           T+N S+  ++  +L +F + + + HI     T+LN   N
Sbjct: 383 TLNASFSTIQFVALGVFHSKISDPHIGGTYMTILNTLSN 421


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 160 DDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKGSPMSARALEPL 300
           DDV  CL++K   Y   ++  R +     V+ +    P+S   ++P+
Sbjct: 343 DDVVACLRQKSTPYLSFIKKARHLI---QVSRDKYKLPISTEEIKPV 386


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
 Frame = -1

Query: 359 AAESTNLDSTCASL-------AFGSSDSGSKARADIGEPLLSKVTPSIKVISLFDLKVSA 201
           A+ S+  DSTC  +       +  +S   ++ ++++ +PLL  +TP+    S   + +++
Sbjct: 117 ASLSSLCDSTCGDVDDEQQFNSLATSPLSTETQSEVSDPLLDTLTPNSLESSFASISLNS 176

Query: 200 Y 198
           +
Sbjct: 177 F 177


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 250 TLESKGSPMSARALEPLSDEPKAREAQVESRLV 348
           TLES+ + ++++  + +S EP    A VE+ ++
Sbjct: 276 TLESRTASIASKNKKDMSSEPTVVAAMVENYMI 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,511,001
Number of Sequences: 5004
Number of extensions: 28460
Number of successful extensions: 84
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)