Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M04
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568 28 2.0
08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671 27 3.4
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 27 4.5
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 27 6.0
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 27 6.0
11_04_0312 - 16259612-16260231,16260264-16262796 26 7.9
06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314 26 7.9
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 26 7.9
04_03_0891 - 20588648-20589100,20589188-20589397 26 7.9
04_01_0615 - 8060085-8060972 26 7.9
01_06_1560 + 38251268-38251471,38251567-38251672,38251992-382522... 26 7.9
>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
Length = 156
Score = 28.3 bits (60), Expect = 2.0
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -1
Query: 272 GEPLLSKVTPSIKVISLFD-LKVSAYFKTFSLRHIYTSSSTQS--LTMPKTLPPIPRSVD 102
G+ L ++ P + V+ L D ++ Y + R Y+SSS+ S P+ PP P +
Sbjct: 13 GDVLTFRLHP-LAVLKLSDRIREFQYQAAAAARVSYSSSSSSSSGTAAPEDPPPPPTRMS 71
Query: 101 SCSVGIXXXXXXXXXXXXXTLISF--DPAT 18
C +G+ LI DPAT
Sbjct: 72 GCVIGVRRGGTVDVSDILDILILHGPDPAT 101
>08_02_0572 - 18842539-18842950,18843242-18843613,18844947-18845671
Length = 502
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 163 DVYM-CLKEKVLKYAETLRSKREITLIDGVTLESKGSPMSARALEPLSDEPKAREAQVES 339
DV++ CLKE + ETL + EI + DG G SA+ S E + E+
Sbjct: 197 DVHLSCLKELMSHSHETLTNLYEILMEDGTPTNDCGEGASAQDNSSYSGESNGDAEEFEN 256
Query: 340 R 342
+
Sbjct: 257 Q 257
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 167 TSSSTQSLTMPKTLPPIPRSVDSCSVGI 84
+S+ST S T+ + PP PRS+ SC I
Sbjct: 6 SSTSTPSSTIERLRPPYPRSI-SCHASI 32
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 26.6 bits (56), Expect = 6.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 212 KVSAYFKTFSL-RHIYTSSSTQSLTMPKTLPPIPRSVDSCSVG 87
KVS + L +H SSS+ MP LPP P S ++ ++G
Sbjct: 46 KVSRRLHSLDLPKHHRRSSSSSPPPMPPPLPPPPPSANAPTLG 88
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 103 IPVRWASRAPPRLKVGQPRKPS 38
+P A+R P R+K+GQP+ P+
Sbjct: 80 LPQPSAARKPLRIKIGQPKLPT 101
>11_04_0312 - 16259612-16260231,16260264-16262796
Length = 1050
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 356 AESTNLDSTCASLAFGSSDSGSKARADIGEPLLSKVTPSIKVISLFDLKVSAYF 195
AE ++ T + + AD+G+ L + PS+ +SL DL YF
Sbjct: 925 AEHVEMEETVGNEIVSADTRYPAHPADVGDSLDPEAFPSLTHLSLVDLPGMEYF 978
>06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314
Length = 147
Score = 26.2 bits (55), Expect = 7.9
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 153 CRR*RVYVPQGEGFE---ICRDFEVEEGDNFD*WCHLGEQRFANVRTCF--GAAVR*AES 317
C R +P G+G+ + ++ GD + C+ G FA+ +CF GA V+ +
Sbjct: 29 CHTPRQDLPLGDGYVPGGVLTSLDIRPGDWY---CNCGYHNFASRASCFKCGAIVKDLPA 85
Query: 318 ERGTGGVKISRFS 356
+G GGV F+
Sbjct: 86 GQG-GGVANGDFA 97
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 26.2 bits (55), Expect = 7.9
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = -1
Query: 266 PLLSKVTPSIKVISLFDLKVSAYFKTFSLRHIYTSSSTQSLTMP-KTLPPI--PRSVDSC 96
P + + TP I S + V AY++T H+ + S T P ++P + PRS S
Sbjct: 782 PYIEEPTPIILPSSHINESVDAYWETLEYCHLTAGFAKPSSTFPGYSVPEVSHPRSWSSL 841
Query: 95 SV 90
V
Sbjct: 842 RV 843
>04_03_0891 - 20588648-20589100,20589188-20589397
Length = 220
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 212 KVSAYFKTFSLRHIYTSSSTQSLTMPKTLPPIPRSVDSCSV 90
+V Y+KT H++T+ + +T+P LP I + SV
Sbjct: 81 RVGVYYKTL---HVFTTYREEPITVPVELPAIYQGHKDVSV 118
>04_01_0615 - 8060085-8060972
Length = 295
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 88 ASRAPPRLKVGQPRKPSYRS 29
+S APP +G PRKP +R+
Sbjct: 191 SSAAPPAWDLGGPRKPHFRA 210
>01_06_1560 +
38251268-38251471,38251567-38251672,38251992-38252203,
38252306-38252512,38253327-38254694
Length = 698
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 253 LESKGSPMSARALEPLSDEPKAREAQVESRLVDSA 357
L + SP+ +L P++D+P+ E +ES + A
Sbjct: 582 LSIRSSPIGECSLSPVADKPEKSEVVIESESTNLA 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.131 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,846,599
Number of Sequences: 37544
Number of extensions: 221510
Number of successful extensions: 554
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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