Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M04
(365 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M83566-1|AAA35629.1| 2181|Homo sapiens calcium channel alpha-1 s... 29 6.0
D43747-1|BAA07804.1| 2170|Homo sapiens voltage-dependent calcium... 29 6.0
AB209171-1|BAD92408.1| 1854|Homo sapiens calcium channel, voltag... 29 6.0
BC039593-1|AAH39593.1| 913|Homo sapiens ubiquitin specific pept... 28 8.0
BC031482-1|AAH31482.1| 989|Homo sapiens C10orf12 protein protein. 28 8.0
BC024315-1|AAH24315.1| 1247|Homo sapiens chromosome 10 open read... 28 8.0
AY074877-1|AAL79676.1| 913|Homo sapiens pVHL-interacting deubiq... 28 8.0
AL442123-2|CAH70916.1| 1247|Homo sapiens chromosome 10 open read... 28 8.0
AL158207-6|CAC88170.1| 914|Homo sapiens ubiquitin specific pept... 28 8.0
AK023084-1|BAB14396.1| 914|Homo sapiens protein ( Homo sapiens ... 28 8.0
AB023220-1|BAA76847.2| 917|Homo sapiens KIAA1003 protein protein. 28 8.0
>M83566-1|AAA35629.1| 2181|Homo sapiens calcium channel alpha-1
subunit protein.
Length = 2181
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 21 CWIERYEGLRGCPTFSRGGARDAHRTGIYRSWNRWQRF 134
CW R + P+ R + ++ + R W RW RF
Sbjct: 494 CWWRRRGAAKAGPSGCRRWGQAISKSKLSRRWRRWNRF 531
>D43747-1|BAA07804.1| 2170|Homo sapiens voltage-dependent calcium
channel alpha1 subunit, CACN4 protein.
Length = 2170
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 21 CWIERYEGLRGCPTFSRGGARDAHRTGIYRSWNRWQRF 134
CW R + P+ R + ++ + R W RW RF
Sbjct: 485 CWWRRRGAAKAGPSGCRRWGQAISKSKLSRRWRRWNRF 522
>AB209171-1|BAD92408.1| 1854|Homo sapiens calcium channel,
voltage-dependent, L type, alpha 1D subunit variant
protein.
Length = 1854
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 21 CWIERYEGLRGCPTFSRGGARDAHRTGIYRSWNRWQRF 134
CW R + P+ R + ++ + R W RW RF
Sbjct: 167 CWWRRRGAAKAGPSGCRRWGQAISKSKLSRRWRRWNRF 204
>BC039593-1|AAH39593.1| 913|Homo sapiens ubiquitin specific
peptidase 20 protein.
Length = 913
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 334 PPVPLSLSAHRTAAPK---HVRTLANLCSPR*HHQ 239
PP P S S RT P H+R+ + CSP HH+
Sbjct: 365 PPSPRSSSPCRTPEPDNDAHLRSSSRPCSPVHHHE 399
>BC031482-1|AAH31482.1| 989|Homo sapiens C10orf12 protein protein.
Length = 989
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 338 DSTCASLAFGSSDSGSKARADIGEPLLSKVTPS 240
D+ C+SL SS SG ARA P ++T S
Sbjct: 531 DAPCSSLGLSSSGSGDAARAPKSVPRPKRLTSS 563
>BC024315-1|AAH24315.1| 1247|Homo sapiens chromosome 10 open reading
frame 12 protein.
Length = 1247
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 338 DSTCASLAFGSSDSGSKARADIGEPLLSKVTPS 240
D+ C+SL SS SG ARA P ++T S
Sbjct: 697 DAPCSSLGLSSSGSGDAARAPKSVPRPKRLTSS 729
>AY074877-1|AAL79676.1| 913|Homo sapiens pVHL-interacting
deubiquitinating enzyme 2 protein.
Length = 913
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 334 PPVPLSLSAHRTAAPK---HVRTLANLCSPR*HHQ 239
PP P S S RT P H+R+ + CSP HH+
Sbjct: 365 PPSPRSSSPCRTPEPDNDAHLRSSSRPCSPVHHHE 399
>AL442123-2|CAH70916.1| 1247|Homo sapiens chromosome 10 open reading
frame 12 protein.
Length = 1247
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 338 DSTCASLAFGSSDSGSKARADIGEPLLSKVTPS 240
D+ C+SL SS SG ARA P ++T S
Sbjct: 697 DAPCSSLGLSSSGSGDAARAPKSVPRPKRLTSS 729
>AL158207-6|CAC88170.1| 914|Homo sapiens ubiquitin specific
peptidase 20 protein.
Length = 914
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 334 PPVPLSLSAHRTAAPK---HVRTLANLCSPR*HHQ 239
PP P S S RT P H+R+ + CSP HH+
Sbjct: 366 PPSPRSSSPCRTPEPDNDAHLRSSSRPCSPVHHHE 400
>AK023084-1|BAB14396.1| 914|Homo sapiens protein ( Homo sapiens
cDNA FLJ13022 fis, clone NT2RP3000753, weakly similar to
NEUROFILAMENT TRIPLET H PROTEIN. ).
Length = 914
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 338 DSTCASLAFGSSDSGSKARADIGEPLLSKVTPS 240
D+ C+SL SS SG ARA P ++T S
Sbjct: 364 DAPCSSLGLSSSGSGDAARAPKSVPRPKRLTSS 396
>AB023220-1|BAA76847.2| 917|Homo sapiens KIAA1003 protein protein.
Length = 917
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 334 PPVPLSLSAHRTAAPK---HVRTLANLCSPR*HHQ 239
PP P S S RT P H+R+ + CSP HH+
Sbjct: 369 PPSPRSSSPCRTPEPDNDAHLRSSSRPCSPVHHHE 403
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.314 0.131 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,266,514
Number of Sequences: 237096
Number of extensions: 1104967
Number of successful extensions: 2153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2150
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2306171440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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