Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M04
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   2.6  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   3.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   8.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   8.0  

>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 353 ESTNLDSTCASLAFGSSDSGSKARA 279
           +S N   TC   A  S+  GS++R+
Sbjct: 199 KSENETKTCKKYAISSNSLGSRSRS 223


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 299 CPMSRKRERHRWSQD 343
           CP+ + +ER  W  D
Sbjct: 103 CPLEKLKERRIWRDD 117


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 134 WALLRTVSTMTCI 172
           WAL + +S M CI
Sbjct: 328 WALFKAMSHMLCI 340


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 134 WALLRTVSTMTCI 172
           WAL + +S M CI
Sbjct: 296 WALFKAMSHMLCI 308


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 205 ETLRSKREITLIDGVTLESKGS 270
           + +R+ R+ + +DGVTL +  S
Sbjct: 145 QLIRNLRQSSALDGVTLLADNS 166


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 296 RCPMSRKRERHR 331
           RC +S KR+R R
Sbjct: 79  RCQLSNKRDRSR 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.131    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,235
Number of Sequences: 438
Number of extensions: 2054
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)