Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M03
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc... 129 2e-31
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi... 128 3e-31
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 23 2.1
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.3
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 25 4.3
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 25 5.7
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 25 5.7
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy... 25 5.7
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 24 9.9
>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 148
Score = 129 bits (312), Expect = 2e-31
Identities = 64/148 (43%), Positives = 84/148 (56%)
Frame = +3
Query: 21 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 200
M T KTRKLRGHVS AGG H R + DKYHPGYFGK+GMR
Sbjct: 1 MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60
Query: 201 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 380
+H+ +N + P +NLD+LWTL+ +AR KY PVIN++++ P+
Sbjct: 61 FHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET 120
Query: 381 PVIVKAKFFSKTAEQKIKAVGGVCVLSA 464
PVIV+ ++ S+ AE+KIK GGV L A
Sbjct: 121 PVIVQTRYVSRRAEEKIKQAGGVVELIA 148
>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
27a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 128 bits (310), Expect = 3e-31
Identities = 63/148 (42%), Positives = 82/148 (55%)
Frame = +3
Query: 21 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 200
M T KTRKLRGHVS AGG H R + DKYHPGYFGK+GMR
Sbjct: 1 MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60
Query: 201 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 380
+H+ +N + P +NLD+LWTLV + R KY PVIN++++ P
Sbjct: 61 FHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT 120
Query: 381 PVIVKAKFFSKTAEQKIKAVGGVCVLSA 464
PVI++ ++ S+ AE+KIK GGV L A
Sbjct: 121 PVIIQTRYVSRRAEEKIKQAGGVVELIA 148
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 22.6 bits (46), Expect(2) = 2.1
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 132 HHQHYHVHQD 103
HH H+H H D
Sbjct: 305 HHHHHHSHDD 314
Score = 22.2 bits (45), Expect(2) = 2.1
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1
Query: 141 DGAHHQHYHVH 109
+G HH H+H H
Sbjct: 297 EGHHHHHHHHH 307
>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 116
Score = 25.4 bits (53), Expect = 4.3
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 372 PKQPVIVKAKFFSKTAEQKIKAV 440
P++P+I+ +F+S E++IK +
Sbjct: 17 PQKPLIITKRFYSTPGERRIKDI 39
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +3
Query: 192 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVI 323
+ NY ++ FCP L D + + KY A K+ V+
Sbjct: 120 IENYVLKHGGTFCPDLTRDVTHLIAGTSSGRKYEYALKWKINVV 163
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 25.0 bits (52), Expect = 5.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 192 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARL 284
M NY +R D +LNL K W + AR+
Sbjct: 36 MDNYVWKRRSDGVHILNLGKTWEKLVLAARV 66
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 192 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARL 284
M NY +R D ++NL K W + AR+
Sbjct: 37 MENYVWKRRSDGIHIINLGKTWEKLVLAARV 67
>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 5.7
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = -1
Query: 297 QMHTLVLPAQRPESTVCQDLK--QGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQ 124
++H + RP+ V + +GR+ G + + QGG +G HH
Sbjct: 688 KLHFVQKDESRPKEPVVDAAQKHEGRSETLAQPGQQNANQSEEKQGGQNGS---NGGHHH 744
Query: 123 HYHVH 109
H+H H
Sbjct: 745 HHHHH 749
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 317 RHLAICGRCIL*SCLLRDQSPQ 252
RH +CGR I C+L PQ
Sbjct: 295 RHCRLCGRVICRFCVLEISLPQ 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,305
Number of Sequences: 5004
Number of extensions: 28628
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -