Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M03
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 138 2e-33
03_04_0027 + 16593133-16593573 133 8e-32
02_01_0563 + 4134954-4135388 130 4e-31
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 31 0.46
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 26 0.46
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 23 1.7
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 29 2.4
07_03_1617 - 28169177-28169400,28169508-28169763,28170308-281705... 27 5.6
12_01_0981 + 9931542-9931606,9931779-9933105 27 7.4
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 27 9.8
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 9.8
>07_03_1250 - 25183375-25183815
Length = 146
Score = 138 bits (334), Expect = 2e-33
Identities = 66/148 (44%), Positives = 89/148 (60%)
Frame = +3
Query: 21 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 200
M TS +K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 201 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 380
+H RNK + P +N+++LW++V + + A A GK P++++ + P++
Sbjct: 61 FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEK 118
Query: 381 PVIVKAKFFSKTAEQKIKAVGGVCVLSA 464
P++VKAK SK AE+KIKA GG VL+A
Sbjct: 119 PIVVKAKLISKVAEKKIKAAGGAVVLTA 146
>03_04_0027 + 16593133-16593573
Length = 146
Score = 133 bits (321), Expect = 8e-32
Identities = 68/149 (45%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Frame = +3
Query: 21 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 200
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 201 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 380
+H N+ CP +N+++LW++V K A A GK PVI++ + P Q
Sbjct: 61 FHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQ 117
Query: 381 -PVIVKAKFFSKTAEQKIKAVGGVCVLSA 464
P++VKAK SK AE+KIKA GG +L+A
Sbjct: 118 RPIVVKAKLISKVAEKKIKAAGGAVLLTA 146
>02_01_0563 + 4134954-4135388
Length = 144
Score = 130 bits (315), Expect = 4e-31
Identities = 66/149 (44%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Frame = +3
Query: 21 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 200
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 201 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVK-AXXXXXXXXXXXPK 377
+H N+ CP +N+++LW++V + A A GK PVI++ + P+
Sbjct: 61 FHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPE 115
Query: 378 QPVIVKAKFFSKTAEQKIKAVGGVCVLSA 464
+P++VKAK SK AE+KIKA GG +L+A
Sbjct: 116 RPIVVKAKLISKVAEKKIKAAGGAVLLTA 144
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 31.1 bits (67), Expect = 0.46
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 138 GAHHQHYHVHQDAYGACRYDHDH 70
G HH+H+H H+ +G DH H
Sbjct: 533 GRHHRHHHDHRHRHGHSHGDHHH 555
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 25.8 bits (54), Expect(2) = 0.46
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 141 DGAHHQHYHVHQ 106
D HH H+HVHQ
Sbjct: 42 DVGHHHHHHVHQ 53
Score = 23.8 bits (49), Expect(2) = 0.46
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 132 HHQHYHVHQDAYG 94
HH H H HQ +G
Sbjct: 47 HHHHVHQHQQQHG 59
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 23.4 bits (48), Expect(3) = 1.7
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1
Query: 132 HHQHYHVHQDA 100
HH H+H H+D+
Sbjct: 356 HHHHHHGHEDS 366
Score = 21.4 bits (43), Expect(3) = 1.7
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 138 GAHHQHYHVH 109
G HH H+H H
Sbjct: 352 GHHHHHHHHH 361
Score = 21.0 bits (42), Expect(3) = 1.7
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 123 HYHVHQDAYGA 91
HY VH+ YGA
Sbjct: 377 HYPVHEPRYGA 387
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -1
Query: 225 NPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQHYHVHQDAYGACRY 82
+P + N QV T + P C G HH H+H G+C +
Sbjct: 140 SPLYLGGTNTVLQVQDMTMMSSTPA--CYGEHHHHHHHQLTKEGSCNH 185
>07_03_1617 -
28169177-28169400,28169508-28169763,28170308-28170556,
28170680-28170810,28170902-28171157
Length = 371
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 129 GEHHHRINMDKYHPGYFGKLGMRNYHMRRNKDFCPVLNLDKLWTL 263
G+ + D YHP L M Y + + + +NL KL++L
Sbjct: 327 GDRKSHVFWDPYHPSEAANLVMAKYIVDGDSKYISPMNLRKLFSL 371
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 27.1 bits (57), Expect = 7.4
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 135 HHHRINMDKYHPGYFGKLGMRNYHMR-RNKDFCPVLNLDKL--WTLVSEQARLKYASATD 305
HHH+ N + +HP Y + + R RN DF P D L W +E+ Y + +
Sbjct: 161 HHHQYNPEPHHPHYEHRPHYADPAKRSRNVDF-PTFEGDYLESWIRKAEKYFSLYQTPEE 219
Query: 306 GKV 314
KV
Sbjct: 220 DKV 222
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 141 DGAHHQHYHVHQDAYG 94
D HH H+H H DA G
Sbjct: 48 DHQHHHHHHHHHDAAG 63
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 126 GGEHHHRINMDKYH 167
GG HHH+ NM K H
Sbjct: 313 GGGHHHKQNMQKQH 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,444,051
Number of Sequences: 37544
Number of extensions: 207920
Number of successful extensions: 641
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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