Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M03
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   157   4e-39
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    88   3e-18
AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin...    29   1.6  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AL117206-9|CAL22706.1|  292|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical ...    23   9.8  
AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical ...    23   9.8  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  157 bits (381), Expect = 4e-39
 Identities = 75/148 (50%), Positives = 95/148 (64%)
 Frame = +3

Query: 21  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 200
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 201 YHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 380
           +H+ +N+ +CP +N+++LW+LV ++ R K   AT GK PVI+  K            P+ 
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117

Query: 381 PVIVKAKFFSKTAEQKIKAVGGVCVLSA 464
           P+IVKA+FFS  AEQKIK  GG CVL A
Sbjct: 118 PLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 87.8 bits (208), Expect = 3e-18
 Identities = 42/91 (46%), Positives = 58/91 (63%)
 Frame = +3

Query: 192 MRNYHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXX 371
           MR +H+ +N+ +CP +N+++LW+LV ++ R K   AT GK PVI+  K            
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 372 PKQPVIVKAKFFSKTAEQKIKAVGGVCVLSA 464
           P+ P+IVKA+FFS  AEQKIK  GG CVL A
Sbjct: 58  PETPLIVKARFFSHEAEQKIKKAGGACVLVA 88


>AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin
           protein 3 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -1

Query: 285 LVLPAQRPESTVCQDLKQGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCD 139
           L  P   P S VC+      +PC+++  N+ Y    +    T     C+
Sbjct: 130 LSAPCTEPRSYVCETPSTHEDPCYYNYNNYCYTFSHNQSSFTTAQAICE 178


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 156 DKYHPGYFGKLGMRNYHMRRN 218
           D YH  YFGK G   YH+ RN
Sbjct: 405 DNYHNRYFGKAG---YHLTRN 422


>AL117206-9|CAL22706.1|  292|Caenorhabditis elegans Hypothetical
           protein Y67A10A.11 protein.
          Length = 292

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 207 CGNFSY-QVCQSTQGGTCPC 151
           C   +Y + C STQ G CPC
Sbjct: 45  CSQINYSRTCLSTQMGNCPC 64


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 219  CFFSCGNFSYQVCQSTQGGTCP 154
            C FS  N  Y  C + QG  CP
Sbjct: 946  CRFSQSNHKYYCCGNIQGSMCP 967


>AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3a protein.
          Length = 426

 Score = 23.4 bits (48), Expect(2) = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 147 FCDGAHHQHYHVH 109
           + DG HH H H H
Sbjct: 410 YYDGGHHHHRHHH 422



 Score = 21.4 bits (43), Expect(2) = 9.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 132 HHQHYHVHQD 103
           HH+H+H H D
Sbjct: 417 HHRHHHHHCD 426


>AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3b protein.
          Length = 426

 Score = 23.4 bits (48), Expect(2) = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 147 FCDGAHHQHYHVH 109
           + DG HH H H H
Sbjct: 410 YYDGGHHHHRHHH 422



 Score = 21.4 bits (43), Expect(2) = 9.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 132 HHQHYHVHQD 103
           HH+H+H H D
Sbjct: 417 HHRHHHHHCD 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,532,704
Number of Sequences: 27780
Number of extensions: 178470
Number of successful extensions: 604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)