Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M02
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 99 2e-22
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 79 4e-16
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 66 4e-12
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 63 2e-11
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 63 3e-11
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 62 6e-11
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 58 5e-10
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 57 2e-09
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 57 2e-09
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 55 7e-09
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 54 9e-09
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 54 2e-08
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 53 3e-08
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 52 5e-08
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 50 2e-07
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 50 2e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 49 4e-07
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 48 6e-07
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 48 1e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 47 1e-06
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 47 2e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 46 2e-06
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 46 2e-06
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 46 3e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 9e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 43 3e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 42 5e-05
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 42 7e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 41 9e-05
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 9e-05
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 41 1e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 6e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 38 0.001
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 38 0.001
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 36 0.003
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 35 0.008
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.010
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.013
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 32 0.054
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.094
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 31 0.12
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.16
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 30 0.22
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 1.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 1.2
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 26 2.7
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 3.5
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 26 3.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.2
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 6.2
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 6.2
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.2
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 25 6.2
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc... 25 8.2
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.2
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 25 8.2
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 8.2
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 99 bits (238), Expect = 2e-22
Identities = 55/130 (42%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Frame = +1
Query: 4 RGLGVPIIVQHTQAEKNRVGNTLPNLAPKTSNGPT--RLYVGSLHFNITEDMLRGIFEPF 177
R LG+P+IVQ T+AEKNR LA S RL V ++HFN+T++ ++ IFEPF
Sbjct: 304 RLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFEPF 363
Query: 178 GKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQLNGFELAGRPMKV--GN--VTER 345
G I+ + L D + +SKG+G++ + + A+ A+E++NGF+LAGR M+V GN T
Sbjct: 364 GDIEFVHLQRDDQN-RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTE 422
Query: 346 TDGGSSTRFD 375
T RFD
Sbjct: 423 TTSSMLKRFD 432
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 79.0 bits (186), Expect = 4e-16
Identities = 41/95 (43%), Positives = 57/95 (60%)
Frame = +1
Query: 76 NLAPKTSNGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFH 255
N + S ++VG+L FN TED L F G I I+L TDP++G+ KG+G++TF
Sbjct: 356 NFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Query: 256 HAADAKKAMEQLNGFELAGRPMKVGNVTERTDGGS 360
AKK +E +NG +AGRP ++ T RT GGS
Sbjct: 416 DIDSAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGS 449
Score = 48.8 bits (111), Expect = 4e-07
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +1
Query: 94 SNGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAK 273
SN ++VG L +N+ + L FE +G I +++ D ++G+SKGYG++ F AK
Sbjct: 259 SNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
Query: 274 KAMEQLNGFELAGR 315
A+ E+ GR
Sbjct: 319 AAVAANGTKEIDGR 332
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 65.7 bits (153), Expect = 4e-12
Identities = 31/83 (37%), Positives = 50/83 (60%)
Frame = +1
Query: 97 NGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKK 276
N + L+V +L F +D L F G I H ++T+PETG+++GYGF+TF DA++
Sbjct: 2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Query: 277 AMEQLNGFELAGRPMKVGNVTER 345
A ++L +L GR +++ T R
Sbjct: 62 AAKELKNKKLHGRILRLDFATPR 84
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAME 285
++V +L F TE L F FG + + +L+ DP T +S G GF+ F + D + +E
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
Score = 41.1 bits (92), Expect = 9e-05
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +1
Query: 88 KTSNGPTRLYVGSLHFNITEDM-LRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAA 264
+ N P RL + +L ++I + L F FGK+ I++ T G+ G+ F+
Sbjct: 102 RQDNRP-RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGG-GRMCGFAFVWMKDRK 159
Query: 265 DAKKAMEQLNGFELAGRPMKVGNVTERTDGGSSTRFDA 378
A++AM LNG E+ GRP+ V + ++T DA
Sbjct: 160 AAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDA 197
Score = 28.3 bits (60), Expect = 0.66
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 220 GKSKGYGFLTFHHAADAKKAMEQLNGFEL 306
G+SKG+GF+ F A A+ LNG E+
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREI 564
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 63.3 bits (147), Expect = 2e-11
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 73 PNLAPKTS-NGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLT 249
P AP+ S N L+V + + ED L+ IF FG + H+++M +P T S+G+GFL+
Sbjct: 89 PQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLS 148
Query: 250 FHHAADAKKAMEQLNGFELAGRPMKV 327
F +A A++ LN E GR + V
Sbjct: 149 FSTVEEATSAIDNLNSQEFYGRVLNV 174
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 62.9 bits (146), Expect = 3e-11
Identities = 26/72 (36%), Positives = 44/72 (61%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
+YVG++ + + E+ + IF+ G + QL+ DPE+G+ KGYGF +H A A A+ L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 292 NGFELAGRPMKV 327
N ++ R ++V
Sbjct: 67 NNYDAGTRRLRV 78
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 61.7 bits (143), Expect = 6e-11
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = +1
Query: 43 AEKNRVGNTLPNLAPKTSNGPTR--LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPE 216
+E ++A + PT LYVG L ++TE ML +F G + I++ D
Sbjct: 57 SESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAV 116
Query: 217 TGKSKGYGFLTFHHAADAKKAMEQLNGFELAGRPMKV 327
T +S GY ++ FH+ D +KA+++LN + GRP ++
Sbjct: 117 TRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRI 153
Score = 56.4 bits (130), Expect = 2e-09
Identities = 27/72 (37%), Positives = 45/72 (62%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
L++ +L + ++ L+ F FG I ++MTD E GKSKG+GF+ + +A KA+ ++
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424
Query: 292 NGFELAGRPMKV 327
N LAG+P+ V
Sbjct: 425 NQRMLAGKPLYV 436
Score = 52.0 bits (119), Expect = 5e-08
Identities = 25/80 (31%), Positives = 46/80 (57%)
Frame = +1
Query: 106 TRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAME 285
T +Y+ +L ITE +F FG+I + L+ D + K +G+GF+ + + A+KA++
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVD 319
Query: 286 QLNGFELAGRPMKVGNVTER 345
+LN E G+ + VG ++
Sbjct: 320 ELNDKEYKGKKLYVGRAQKK 339
Score = 46.8 bits (106), Expect = 2e-06
Identities = 27/84 (32%), Positives = 41/84 (48%)
Frame = +1
Query: 100 GPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKA 279
G +++ +L I L F FGKI ++ D E G +KGYGF+ F A A
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAA 224
Query: 280 MEQLNGFELAGRPMKVGNVTERTD 351
+E +NG L + + VG+ R +
Sbjct: 225 IEHVNGMLLNDKKVYVGHHVSRRE 248
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 58.4 bits (135), Expect = 5e-10
Identities = 25/72 (34%), Positives = 42/72 (58%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
++VG++ ++++E + IF G + +L+ DPETG KGYGF F + A+ +L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 292 NGFELAGRPMKV 327
N EL R ++V
Sbjct: 69 NNSELGPRKIRV 80
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 56.8 bits (131), Expect = 2e-09
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +1
Query: 109 RLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQ 288
RL++ +L ++ ED L+ +F PFG+++ + + D +T KG+ ++ FH A DA +A +
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 289 LNGFELAGRPMKV 327
L+ GR + V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 43.6 bits (98), Expect = 2e-05
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPF-GKIDH-IQLMTDPET-GK--SKGYGFLTFHHAADAKK 276
+YV +L+F+ ++ + +F+P G + I+ DP+ GK S G+GF+ F A A
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680
Query: 277 AMEQLNGFELAGRPMKVGNVTERTDGGSSTR 369
AM +NGF L G +++ + D + R
Sbjct: 681 AMHAMNGFVLDGHKLEIKLSHQGVDAAAEVR 711
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 56.8 bits (131), Expect = 2e-09
Identities = 26/75 (34%), Positives = 44/75 (58%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
+Y+G+L F++ ED + +F FG+ I L+ D ETGKSKG+ FL + A++ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 292 NGFELAGRPMKVGNV 336
+L R ++V +V
Sbjct: 93 TNVKLLDRLVRVDHV 107
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 54.8 bits (126), Expect = 7e-09
Identities = 24/72 (33%), Positives = 45/72 (62%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
+YVG+L + ++ L +F G + ++ +P TG+SKG+G + F + DA ++E+L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
Query: 292 NGFELAGRPMKV 327
NG+ GRP+++
Sbjct: 341 NGYRYGGRPLQL 352
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 54.4 bits (125), Expect = 9e-09
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = +1
Query: 109 RLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQ 288
++++G L++ T+D LR FE FG++ +M D TG+S+G+GFLTF + + M +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Score = 52.0 bits (119), Expect = 5e-08
Identities = 23/79 (29%), Positives = 45/79 (56%)
Frame = +1
Query: 109 RLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQ 288
+++VG + + TE+ R F FG++ LM D +TG+ +G+GF+T+ + + + M Q
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 289 LNGFELAGRPMKVGNVTER 345
+ G+P++V T +
Sbjct: 308 -PYITIHGKPVEVKRATPK 325
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 53.6 bits (123), Expect = 2e-08
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEP-FGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQ 288
++VG L N+ E + +F + ++MTDP+T S+GYGF+ F D K A+ +
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 289 LNGFELAGRPMKVGNVTERT 348
+ G RP++VG T ++
Sbjct: 248 MQGQICGDRPIRVGLATPKS 267
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +1
Query: 106 TRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAME 285
T L++G L +TE ++ ++ GK ++L+ + TG + GY F+ F +A AM
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMS 152
Query: 286 QLN 294
N
Sbjct: 153 MNN 155
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/72 (27%), Positives = 41/72 (56%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
++VG L ++E+ L+ +F+ FG+I ++++ KG GF+ F + A+ A+ QL
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQSAEIAINQL 358
Query: 292 NGFELAGRPMKV 327
G+ L +++
Sbjct: 359 QGYPLGNSRIRL 370
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 52.8 bits (121), Expect = 3e-08
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Frame = +1
Query: 85 PKTSNGPTRLYVGSLHFNITEDMLRGIFEPFGK-IDHIQLMTDPETGKSKGYGFLTFHHA 261
P S P +VG+L F++TE+ L G F FG+ + I+L+ DP T +S+G+G++ F
Sbjct: 87 PIPSEPPFTAHVGNLSFDLTENDL-GDF--FGEGVTSIRLVIDPLTERSRGFGYVEF-ET 142
Query: 262 ADAKKAMEQLNGFELAGRPMKVGNVTERTDGGSSTRFDADELDR 393
AD A L+G +L GRP+++ R R D + R
Sbjct: 143 ADTLSAALALSGEDLMGRPVRITVAEPRRSFAREERSTGDWVRR 186
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 52.0 bits (119), Expect = 5e-08
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +1
Query: 103 PTRLYVGSLHFNITED--MLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKK 276
P L+V +L NI + L +F FG+I L + P T SKGYGF++F H +A +
Sbjct: 418 PCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQ 477
Query: 277 AMEQLNGFELAGRPMKVGNVTERTD 351
A+ LNG + + V +R D
Sbjct: 478 AINTLNGVLFGKKRLFVNYAEKRED 502
Score = 39.5 bits (88), Expect = 3e-04
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKG-----YGFLTFHHAADAKK 276
+YVG+L L +FEPFG +++ + + + F+TF + A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 277 AMEQLNGFELAGRPMKV 327
A+ LNG G +KV
Sbjct: 82 AIASLNGSSFQGNTLKV 98
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 50.0 bits (114), Expect = 2e-07
Identities = 25/58 (43%), Positives = 35/58 (60%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAME 285
L+VG+L F T+ L+ F G+I ++LMT +TGK KG+GF+ F KAME
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 50.0 bits (114), Expect = 2e-07
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +1
Query: 85 PKTSNGPTRLYVGSLHFNIT--EDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHH 258
P + P+ LYV +L + + L +F PFG I L P +G SKGYGF+ F
Sbjct: 375 PNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQ 434
Query: 259 AADAKKAMEQLNGFELAGRPMKVGNVTERTD 351
A +A + LNG + + + V ++D
Sbjct: 435 IEAAVRAKDTLNGMMVGKKRIFVCFAERKSD 465
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 48.8 bits (111), Expect = 4e-07
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
L V +L + E+ LR +F FG I + L D ETG++KG+ F++++ A KA ++L
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 292 NGF 300
+G+
Sbjct: 264 DGY 266
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 48.4 bits (110), Expect = 6e-07
Identities = 22/71 (30%), Positives = 41/71 (57%)
Frame = +1
Query: 109 RLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQ 288
++Y+ +L N+ ED + + +PFG + QL+ + G SKG+ F F + +DA+ A+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 289 LNGFELAGRPM 321
L+G + G +
Sbjct: 371 LDGKDTYGNKL 381
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 47.6 bits (108), Expect = 1e-06
Identities = 23/77 (29%), Positives = 44/77 (57%)
Frame = +1
Query: 109 RLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQ 288
RL+VG+L ++ ++ L F + + +++ D E GK++G+GF++F + KA +
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWRE 89
Query: 289 LNGFELAGRPMKVGNVT 339
NG + RP+K+ T
Sbjct: 90 KNGKYIGSRPVKLSRAT 106
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 47.2 bits (107), Expect = 1e-06
Identities = 24/80 (30%), Positives = 43/80 (53%)
Frame = +1
Query: 88 KTSNGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAAD 267
K S +YVG++ +++T + L+ F G ++ + ++ D TG KG+ ++ F +
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108
Query: 268 AKKAMEQLNGFELAGRPMKV 327
A+ LNG L RP+KV
Sbjct: 109 VPNAL-LLNGSMLHERPLKV 127
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 46.8 bits (106), Expect = 2e-06
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Frame = +1
Query: 103 PTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHH-------A 261
PT+++V ++ +T + LR F+ FG++ + L +P TG S G ++F A
Sbjct: 93 PTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAA 152
Query: 262 ADAKKAMEQLNGFELAGRPMKV 327
AK A++Q NG +G+P+ V
Sbjct: 153 HSAKIAVQQANGLRFSGKPLSV 174
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 46.4 bits (105), Expect = 2e-06
Identities = 26/95 (27%), Positives = 47/95 (49%)
Frame = +1
Query: 97 NGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKK 276
N +Y+G+L +T+ +L + G + +I + D G+GF F H D +
Sbjct: 8 NQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEY 67
Query: 277 AMEQLNGFELAGRPMKVGNVTERTDGGSSTRFDAD 381
A + LN +L G+P++V ++ D G +T A+
Sbjct: 68 ACQILNQVKLFGKPIRVNRASQ--DRGVNTLIGAN 100
Score = 45.6 bits (103), Expect = 4e-06
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
L+VG+L + E +L F G++ + E G+SKGYGF+++ A A+E +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 292 NGFELAGRPMKVGNVTERTDGG 357
N L +P+ V +R G
Sbjct: 161 NNQFLMNKPITVSYAFKREGKG 182
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 46.4 bits (105), Expect = 2e-06
Identities = 26/72 (36%), Positives = 40/72 (55%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
++VG+L ++TE +L F PFG+I + L E + Y F+ F DAK+AME +
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRK-EKAVDRSYAFVEFDEPEDAKEAMENM 66
Query: 292 NGFELAGRPMKV 327
N L R ++V
Sbjct: 67 NYSILCDRCIRV 78
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 46.0 bits (104), Expect = 3e-06
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +1
Query: 49 KNRVGNTLPNLAPKTSNGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKS 228
KN N+ LA + S +++G+L ITED +R EPFG ID I+++T+
Sbjct: 187 KNSASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTE------ 240
Query: 229 KGYGFLTFHHAADAKKAMEQL 291
+ F+ F + A A KA+++L
Sbjct: 241 RNIAFVHFLNIAAAIKAVQEL 261
Score = 33.1 bits (72), Expect = 0.023
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 76 NLAPKTSNGPTR-LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTF 252
N+A + G +R +Y+G+ ++T + L+ FE FG+I+++ + K F+ F
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFF------REKNCAFVNF 456
Query: 253 HHAADAKKAMEQL 291
A A A++++
Sbjct: 457 TSLASAINAIDRI 469
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.4 bits (100), Expect = 9e-06
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
+++ L ++ E + F +G I+ I+++ + TGKS GY F+ F D K A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 292 NGFELAGRPMKVGNVTERTDGG 357
G L GR + V RT G
Sbjct: 162 AGLMLNGRRIVVDVERGRTVKG 183
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 42.7 bits (96), Expect = 3e-05
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAM 282
++VG+L F E+ L F G ID+++++ DP+T KG+ ++ F KA+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 41.9 bits (94), Expect = 5e-05
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
LYVG L E +R F FG + +++ + +TG SK Y F+ F A E +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 292 NGFELAGRPMKVGNVTE 342
+ + L G+ ++ + E
Sbjct: 167 HNYLLYGKLLQCKVIPE 183
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 41.5 bits (93), Expect = 7e-05
Identities = 24/92 (26%), Positives = 43/92 (46%)
Frame = +1
Query: 52 NRVGNTLPNLAPKTSNGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSK 231
N V T P P PT + + ++ F++ +++L +F + G +
Sbjct: 215 NSVTLTAPP-EPDEETIPTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFR 273
Query: 232 GYGFLTFHHAADAKKAMEQLNGFELAGRPMKV 327
G F FH +AK ++ LNG+E+ GR ++V
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRV 305
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 41.1 bits (92), Expect = 9e-05
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +1
Query: 79 LAPKTSNGPTR--LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTF 252
+ P T N L++ +L F IT + + +F +G + I+L T +++G F+ +
Sbjct: 1 MPPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVY 57
Query: 253 HHAADAKKAMEQLNGFELAGRPMKV 327
+ DA++A E+L+G+ R + V
Sbjct: 58 ENVQDARRACEKLSGYNFMDRYLVV 82
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 41.1 bits (92), Expect = 9e-05
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
+ V +H TE+ + +F FG + ++ L D TG KGY + + A+KA+++
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 292 N 294
N
Sbjct: 72 N 72
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 40.7 bits (91), Expect = 1e-04
Identities = 21/72 (29%), Positives = 41/72 (56%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
+ V +L N+T++ + IF +G IDHI + ++ +KGY ++ + + A A++++
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 292 NGFELAGRPMKV 327
N EL G + V
Sbjct: 161 NNAELDGEELFV 172
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.3 bits (85), Expect = 6e-04
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 196 QLMTDPETGKSKGYGFLTFHHAADAKKAMEQLNGFELAGRPMKV 327
+++ DP TG S+ YGF+ F + + A+ + G+ GRP+++
Sbjct: 213 KIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRI 256
Score = 37.9 bits (84), Expect = 8e-04
Identities = 21/64 (32%), Positives = 37/64 (57%)
Frame = +1
Query: 106 TRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAME 285
T ++VG L N++E L+ F+PFG+I +I++ KG GF+ + + A+KA+
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPF------GKGCGFVQYSEKSAAEKAIN 350
Query: 286 QLNG 297
+ G
Sbjct: 351 TMQG 354
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 37.5 bits (83), Expect = 0.001
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKA 279
L+V L+ ++ L IF FGKI Q++ D ETG S Y F+ F + +KA
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +1
Query: 25 IVQHTQAEKNRVGN----TLPNLAPKTSNGPTR--LYVGSLHFNITEDMLRGIFEPFGKI 186
+ Q +K+ V N TL + K N + L+VG+L + + + L+ F+ G++
Sbjct: 59 LAQSNDKDKHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQV 118
Query: 187 DHIQLMTDPETGKSKGYGFLTF 252
+++ TD +G+ KGY F+ F
Sbjct: 119 PSVRIPTDKTSGRQKGYAFVEF 140
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 35.9 bits (79), Expect = 0.003
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Frame = +1
Query: 103 PTRLYVGSLHFNITEDMLRGIFEPFGKID-HIQLMTDP-----------ETGKSKGYGFL 246
P +YV L +T + L+ +F+ + I + + P E + +G+GF+
Sbjct: 204 PNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFV 263
Query: 247 TFHHAADAKKAMEQLNGFELAGRPMKVGNVTERTD 351
+F +A D +A+E++NG ++ + V + R D
Sbjct: 264 SFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
Score = 35.5 bits (78), Expect = 0.004
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 109 RLYVGSLHFNITEDMLRGIFEPFGKIDHIQL-MTDPETGKS---KGYGFLTFHHAADAKK 276
R++VG L + + +R +FE G + + + G G F+TF++ D K
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 277 AMEQLNGFELAGRPMKV 327
A+E LNG L R + V
Sbjct: 105 AIETLNGKTLDDREIVV 121
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 34.7 bits (76), Expect = 0.008
Identities = 25/77 (32%), Positives = 37/77 (48%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
L V ++ + E LR +FE +GK+ + L + E + FL H DA KA L
Sbjct: 876 LGVTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEGAVVE---FLDIH---DAGKASLAL 929
Query: 292 NGFELAGRPMKVGNVTE 342
G E+ GR + + V E
Sbjct: 930 EGHEIGGRLLHITTVNE 946
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.3 bits (75), Expect = 0.010
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 112 LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAMEQL 291
+YVG+L F TE+ + +F G+I I + D T G+ F+ + DA +++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 292 NGFELAGR 315
+ L R
Sbjct: 94 SRTSLDER 101
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.9 bits (74), Expect = 0.013
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 94 SNGPTR-LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADA 270
S TR +Y+ L N +++ L FGK+ + + D ET KGYGF F +
Sbjct: 291 STSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFE---EE 347
Query: 271 KKAMEQLNGFELAG 312
K A+ ++ L G
Sbjct: 348 KSALICISAMTLCG 361
Score = 29.1 bits (62), Expect = 0.38
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 106 TRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAME 285
T LY+ +L + E + +F+P KI +++ D + +S+G GF A+ +
Sbjct: 384 TNLYISNLPLHWNESDISTLFKP-SKIISNRVLRDSKE-QSRGVGFARMQDRKTAEDIIN 441
Query: 286 QLNGFEL 306
+ N F L
Sbjct: 442 KFNNFVL 448
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.9 bits (69), Expect = 0.054
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +1
Query: 106 TRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADAKKAME 285
TRL+VG + T + + F+ +G+I +LM G+GF+ A DA+ +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVN 55
Query: 286 QLNGFELAG 312
G E G
Sbjct: 56 DFQGKEFMG 64
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.1 bits (67), Expect = 0.094
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = +1
Query: 37 TQAEKNRVGNTLPNLAPKTSNGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPE 216
T A + + ++ N T+ +++G+L + E + F FGKI+HI++++
Sbjct: 277 TFARPSPLPESIQNFCSNTA-ASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILS--- 332
Query: 217 TGKSKGYGFLTFHHAADAKKAMEQLN 294
K F+ F + DA K + L+
Sbjct: 333 ---KKNIAFVHFLNIRDAIKVVRTLS 355
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 30.7 bits (66), Expect = 0.12
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +1
Query: 91 TSNGPTRLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLTFHHAADA 270
T T +YV L NIT LR F FG+I + Q+ + G + F A
Sbjct: 171 TDPNNTAVYVHQLPENITTQELRSYFLHFGEILYTQV--------NNNSGRIVFAQRYFA 222
Query: 271 KKAMEQLNGFELAG 312
++A+ ++N F L G
Sbjct: 223 EQAINEMNNFPLHG 236
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 30.3 bits (65), Expect = 0.16
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = -1
Query: 491 NTDAAACGICKPVPSASLNISCKRPVAPRSMPARSNSSAS 372
N DA+A I P S++ S P AP S+PA SN+SAS
Sbjct: 210 NLDASALPISPPSDFFSVH-SHNLPNAPPSIPANSNNSAS 248
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 29.9 bits (64), Expect = 0.22
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 109 RLYVGSLHFNITEDMLRGIFEPFGKIDHIQLMT-DPETGKSKGYGFLTFHHAADA-KKAM 282
R+YVG L +I L F FG + +++++ G + + +L F D +K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 283 EQLNGFELAGRPMKV 327
L+ G +++
Sbjct: 66 SYLSNATFKGSKLRI 80
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.5 bits (58), Expect = 1.2
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = -3
Query: 426 QTACRSKIDACSVQLIRIKASARPTICPFRHITYFHRSSCQFETVQLFHCFLSIRCMMEC 247
QT C +D S+ L + K ++ TI PF T SS QF Q S + +C
Sbjct: 116 QTECSLALDMTSLLLSKFKENSIETISPFLKST-VPPSSLQFSRSQPPESKESDATLAKC 174
Query: 246 KKSISFT 226
K S T
Sbjct: 175 WKEKSLT 181
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.5 bits (58), Expect = 1.2
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +1
Query: 73 PNLAPKTSNGPTR-LYVGSLHFNITEDMLRGIFEPFGKIDHIQLMTDPETGKSKGYGFLT 249
P + P + +R L++G + ++ E +LR +FE FG + + L + +GFL
Sbjct: 394 PTIPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL------NHNYRHGFLK 447
Query: 250 FHHAADAKKAMEQLNGFELA 309
A+KA + A
Sbjct: 448 MFRRDAAEKAQVAMENVPFA 467
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 490 ILTLQLVESVNLFLLQA*TSAANGLSLQDRCLLGPTH 380
+L LQ++ S L + +NG + +RC LGP H
Sbjct: 234 VLALQVISSFGHDLFRQ----SNGAMMMERCWLGPEH 266
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 3.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 446 ASLNISCKRPVAPRSMPARSNSSASKRVLDPPSVRSVTLPT 324
+SLN + +P P S +SNSS+S+ V P + LPT
Sbjct: 240 SSLNSNIVKPPLPPSN-VQSNSSSSENVPKPNAETQEDLPT 279
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 102 TYQIVCRFASF*YYRRYASRHI*TVW 179
+Y+I+CRF S +YR A H W
Sbjct: 163 SYRIMCRFNSGFFYRNKALSHYDYYW 188
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 413 APRSMPARSNSSASKRVLDPPSVRSVTLPT 324
+P S +S+ S +LDP SV S LP+
Sbjct: 122 SPTSSEYTPSSTESSSLLDPSSVSSAILPS 151
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.0 bits (52), Expect = 6.2
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -1
Query: 419 PVAPRSMPARSNSSASKRVLDP---PSVRSVTLPTFIGRPANSKPFSCS 282
P PRS P + + +KR+ P P+ +VT+ I A K S +
Sbjct: 947 PPPPRSEPVSTTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAA 995
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.0 bits (52), Expect = 6.2
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 271 KKAMEQLNGFELAGRPMKVGNVTERTDGGSSTRFDADELDRAGIDLGATGRLQLM 435
K+ ++ + G+ M V + R SSTR DA + + L GR++++
Sbjct: 842 KELANLISNLTVGGKTMLVSQLLTRFREQSSTRLDASDFEACLGALERRGRIKVI 896
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.0 bits (52), Expect = 6.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 22 IIVQHTQAEKNRVGNTLPNLAPKT 93
++++ T+ K+R GN++ L PKT
Sbjct: 740 LVLRRTKETKDRNGNSIVTLPPKT 763
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 6.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -1
Query: 398 PARSNSSASKRVLDPPSVRSVTLPTFIGRPANSKPFSCS 282
P SN S PS S TLP + NS+P S S
Sbjct: 24 PNSSNGQTSTSA-GHPSSSSSTLPNYAASSLNSRPVSSS 61
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 6.2
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = -1
Query: 452 PSASLNISCKRPVAPRSMPARSNSSASKRVLDPPSVRSVTLPTFIGRPANSKP 294
P AS N S A A S S+ S ++ S T PT + + +KP
Sbjct: 185 PFASFNSSASAIAAASKSAAASASALSSDTGRSATMNSTTFPTAMKSQSTTKP 237
>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 377 ASKRVLDPPSVRSVTLPTFIG 315
A +R ++PPSV + TL F+G
Sbjct: 99 AIERFIEPPSVSNPTLMFFVG 119
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 24.6 bits (51), Expect = 8.2
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Frame = -1
Query: 173 GSNMPRSIS-SVILK*SEPTYNLVGPLLV-------------FGAKFGSVLPTLFFSACV 36
GS++ S S S++ K P Y+L+G + V FG F S P +FF+ C+
Sbjct: 388 GSSIANSPSVSLLTKVLHPKYHLIGNVAVQISISLSDTVGAIFGGAFRSFSPVVFFAVCL 447
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 24.6 bits (51), Expect = 8.2
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +1
Query: 4 RGLGVPIIVQHTQAEKNRVGNTLPNLAPKTSNGPTRLYVGSLHFNITEDMLRGIFEPFGK 183
R LG P + + N V ++LPN+ P T ++ ML + P +
Sbjct: 240 RVLGTPSYHEISVMNPNYVNHSLPNVRPHTLESVMPHNCTKNAMDLLHKML--TYVPSKR 297
Query: 184 IDHIQLMTDP 213
I I+++T P
Sbjct: 298 ISAIEVLTHP 307
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 351 ICPFRHITYFHRSSCQFETVQLFHCFLS 268
I F+H + + + Q+FHCFLS
Sbjct: 457 ITAFKHAHIYDKIFLEEARKQVFHCFLS 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.136 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,461
Number of Sequences: 5004
Number of extensions: 46169
Number of successful extensions: 223
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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