Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M02
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    25   0.58 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.4  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 160 GIFEPFGKIDHIQLMTDPETGKSK 231
           G+F  FG I H++L +D   G+ K
Sbjct: 61  GLFYEFGLITHVKLSSDWYMGQGK 84


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 289 LNGFELAGRPMKVGNVTER 345
           LNG E AGRP  +   ++R
Sbjct: 318 LNGLEFAGRPQNLQLQSQR 336


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 355 HHLSVPSHYL 326
           H +S+P+HYL
Sbjct: 103 HEMSIPNHYL 112


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 126 RTDIQSGRSITSFWC*VWQRVAYSVLFRLRMLNNDWDT 13
           R+ + + R ITS  C        S  F +  + +DW++
Sbjct: 327 RSAVLAAREITSSSCSYMAHEKLSYAFSVWRMEDDWNS 364


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 312 SCQFETVQLFHCFLSIR 262
           SC     Q FHC+  +R
Sbjct: 418 SCSSFFQQFFHCYCPVR 434


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 120 RFASF*YYRRYASRHI 167
           RFAS  YY  Y+  H+
Sbjct: 428 RFASGRYYSAYSLHHV 443


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 242 FLHSIMQRMLRKQWNN*TVSNWQDD 316
           FL  + Q  + K W N  +SN   D
Sbjct: 354 FLQPVCQNEMNKWWWNMKISNLSFD 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,640
Number of Sequences: 438
Number of extensions: 3330
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)