Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M01
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 116 1e-27
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc... 28 0.33
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 28 0.33
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 0.58
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 0.58
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 4.1
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 24 7.1
SPCC576.12c |||DUF2008 family protein|Schizosaccharomyces pombe|... 23 9.4
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 23 9.4
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 116 bits (279), Expect = 1e-27
Identities = 57/105 (54%), Positives = 73/105 (69%)
Frame = +3
Query: 21 KTMAVPVQILSRFKNGLKLSNVRFACGNPYSETRKNLVLTSETKVIVQGFTGKQGTFHSQ 200
KT + L RF + +L N + + Y +T NL++ S+TKVI QGFTGKQGTFH+Q
Sbjct: 3 KTQTTLLTSLRRFSSSSQLKNSK----SLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQ 58
Query: 201 QALDYGTKVVGGISPKKAGQEHLGKPVFATVK*AMNATQAQASVI 335
A+DYGTKVVGG +PKKAG HLGKPVF T++ AM T+A AS +
Sbjct: 59 HAMDYGTKVVGGTNPKKAGTTHLGKPVFGTIEEAMKETKADASAV 103
>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 28.3 bits (60), Expect = 0.33
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -1
Query: 301 AYFTVANTGFPRCSCPAFFGEIPPTTLVP*SRACWLWNVP--CLPVNPCTITLVSLV 137
A++ V T R + IPP L+ + WL P +PVN ITL SL+
Sbjct: 225 AFYAVGETALSRVINASPIMVIPPLVLMRLQKQNWLRTRPKLTIPVNLGLITLTSLI 281
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 28.3 bits (60), Expect = 0.33
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 12 FSNKTMAVPVQILSRFKNGLK-LSNVRFACGNPYS 113
F NKT +PV +SR NG + SN + P++
Sbjct: 39 FENKTQVLPVDSVSRLSNGARSRSNSNISLSEPHA 73
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.5 bits (58), Expect = 0.58
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 111 SETRKNLVLTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGISPKKAGQEHLGKPVFAT 290
S + K L ++ + GF QGTFH+ ++GT V P + +E L K V
Sbjct: 604 SSSMKGNKLAEDSYLNEAGFDWNQGTFHN--GSEFGTTGV----PDEPNEEELPKHVLKQ 657
Query: 291 VK*AMNATQA 320
V+ +N + A
Sbjct: 658 VEHIINESAA 667
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 0.58
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 19 IKQWRFQSKFFLGSKMDSNSAMS-DLHVVTLILKLEKT*FSR--VKLKLLYKGSLVNRV 186
+K+WR S+F LG+ D N++ S D+ + I KL + +++ LY+ +N+V
Sbjct: 684 LKKWRLTSRFCLGNLHDWNTSSSVDVGELRGIDKLALVQLDKFQTEIRELYESYSINKV 742
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 24.6 bits (51), Expect = 4.1
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 TRFFSNKTMAVPVQILSRFKNGLKLSNVRFACGNPYSETRKNLVLTSETKVIVQGFTGKQ 182
++FF+N M I R NG+ + + A S + + K+++ G G+Q
Sbjct: 359 SKFFTNDNMPYISSIYLRHFNGVLQNIIEPAAARKRSSLLTAIRSLGDRKIVLIGDNGEQ 418
Query: 183 G-TFHSQQALDYGTKVVG 233
+++ A + +++G
Sbjct: 419 DLQIYAEMAACFPERILG 436
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 23.8 bits (49), Expect = 7.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 144 ETKVIVQGFTGKQGTFHSQQALDYGTKVVGGISPKKAGQEHLGKPVFATVK 296
ETKV+ G TG++ T + G+ G + K +G P F VK
Sbjct: 8 ETKVVTDGTTGEKKTISYEPCRVLGSGSFGVVIQAKL----VGTPGFIAVK 54
>SPCC576.12c |||DUF2008 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 89
Score = 23.4 bits (48), Expect = 9.4
Identities = 16/69 (23%), Positives = 29/69 (42%)
Frame = +3
Query: 9 FFSNKTMAVPVQILSRFKNGLKLSNVRFACGNPYSETRKNLVLTSETKVIVQGFTGKQGT 188
F S K + L L++ + C Y E + +++ +SE + IV +
Sbjct: 21 FSSEKGTKITPSALELITQYLRIYSKEAVC-RAYEEKKNSIMSSSENEDIVLELEDLENG 79
Query: 189 FHSQQALDY 215
+Q ALD+
Sbjct: 80 IAAQLALDF 88
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 23.4 bits (48), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 51 SRFKNGLKLSNVRFACGNPYSETRKN 128
SR + + LSN FA G+P S+ N
Sbjct: 473 SRHLSHVSLSNPDFAIGSPMSQDSSN 498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,298,508
Number of Sequences: 5004
Number of extensions: 23346
Number of successful extensions: 73
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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