Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M01
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...    86   6e-18
02_02_0031 - 6215098-6215231,6215963-6216122,6217225-6217395,621...    27   2.9  
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140     26   6.6  
01_03_0310 - 14897698-14898627                                         26   6.6  
03_05_0933 + 28933139-28933531                                         26   8.7  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score = 86.2 bits (204), Expect = 6e-18
 Identities = 39/63 (61%), Positives = 49/63 (77%)
 Frame = +3

Query: 147 TKVIVQGFTGKQGTFHSQQALDYGTKVVGGISPKKAGQEHLGKPVFATVK*AMNATQAQA 326
           T+VI QG TGK GTFH++QA++YGT +VGG++PKK G EHLG PVF +V  A   T+A A
Sbjct: 43  TRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANA 102

Query: 327 SVI 335
           SVI
Sbjct: 103 SVI 105


>02_02_0031 -
           6215098-6215231,6215963-6216122,6217225-6217395,
           6217556-6217746,6218047-6218287
          Length = 298

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
 Frame = -1

Query: 244 GEIPPTTLVP*SRACWLWNVPCLPVNPCTITLVS-LVRTKFFRVSE*GLPHANLTL--LS 74
           G++    L   ++  WLW +  +P  PCT+   S  V     R +  G  H  L L   +
Sbjct: 181 GKLRSVALAVTAKMPWLWAMTIMPFLPCTLATGSKSVELLMGRETHHGGHHRLLALSKST 240

Query: 73  LSPFLNRERIWTGTAIVLLEKNL 5
            SP +     W G  I  ++  L
Sbjct: 241 RSPRILLHENWDGPGITDVDTEL 263


>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
          Length = 695

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 106 GLPHANLTLLSLSPFLNRERIWTGTAIVLL 17
           G P  +L     SPF+N++++  G +IV +
Sbjct: 179 GTPRRHLLTTGWSPFVNKKQLTAGDSIVFM 208


>01_03_0310 - 14897698-14898627
          Length = 309

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 184 PCLPVNPCTITLVSLVRTKFFRVSE*GLPHA-NLTLLSLSPFLNRERIWTGTAIVLLEK 11
           PC  +  CTI L   VR   F +++    H+  L   ++  FL+  + +  TA +L EK
Sbjct: 164 PCNGIGCCTIDLPGGVRAFRFNITQREETHSVALGNSTIKAFLSDSQFYFNTADLLSEK 222


>03_05_0933 + 28933139-28933531
          Length = 130

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 210 DYGTKVVGGISPKKAG 257
           D+GTK+V G+ P + G
Sbjct: 85  DWGTKIVSGLGPSRGG 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,133,879
Number of Sequences: 37544
Number of extensions: 140748
Number of successful extensions: 378
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)