Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_M01
(337 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical ... 103 2e-23
Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical pr... 101 2e-22
U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned expre... 31 0.27
U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned expre... 31 0.27
U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned expre... 31 0.27
AL021493-6|CAA16394.2| 781|Caenorhabditis elegans Hypothetical ... 29 0.83
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr... 28 1.9
U80028-1|AAN73865.1| 369|Caenorhabditis elegans Serpentine rece... 28 1.9
AF125452-1|AAD12828.1| 311|Caenorhabditis elegans Hypothetical ... 28 1.9
AL021491-1|CAA16373.2| 319|Caenorhabditis elegans Hypothetical ... 27 2.5
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina... 27 2.5
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul... 27 2.5
Z81142-3|CAB03505.1| 491|Caenorhabditis elegans Hypothetical pr... 27 4.4
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr... 27 4.4
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr... 27 4.4
AF067950-3|AAG24158.2| 371|Caenorhabditis elegans Serpentine re... 26 7.7
>AF003389-2|AAC71132.1| 321|Caenorhabditis elegans Hypothetical
protein F23H11.3 protein.
Length = 321
Score = 103 bits (248), Expect = 2e-23
Identities = 47/76 (61%), Positives = 59/76 (77%)
Frame = +3
Query: 108 YSETRKNLVLTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGISPKKAGQEHLGKPVFA 287
Y++TR NL++ TKVIVQGFTG+QGTFHS+Q L+Y T +VGG+SP KAGQ HLG PVF
Sbjct: 22 YNDTRNNLMINKSTKVIVQGFTGRQGTFHSKQMLEYNTNLVGGVSPNKAGQTHLGLPVFG 81
Query: 288 TVK*AMNATQAQASVI 335
+V A + T A A+VI
Sbjct: 82 SVAEAKDRTGADATVI 97
>Z70203-4|CAA94107.1| 322|Caenorhabditis elegans Hypothetical
protein C05G5.4 protein.
Length = 322
Score = 101 bits (241), Expect = 2e-22
Identities = 48/76 (63%), Positives = 55/76 (72%)
Frame = +3
Query: 108 YSETRKNLVLTSETKVIVQGFTGKQGTFHSQQALDYGTKVVGGISPKKAGQEHLGKPVFA 287
Y+ T NL + +TKVIVQGFTGKQGTFH +Q L+Y TKVVGG++ KAG EHLG PVF
Sbjct: 21 YNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFK 80
Query: 288 TVK*AMNATQAQASVI 335
V A N T A ASVI
Sbjct: 81 NVSEARNKTGADASVI 96
>U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned
expression site protein22, isoform c protein.
Length = 710
Score = 30.7 bits (66), Expect = 0.27
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -3
Query: 236 TTNNLSSIVQGLLAMECTLFTS 171
T NNLS IV GLL + C L TS
Sbjct: 579 TINNLSLIVSGLLTLACPLLTS 600
>U29379-6|AAF99981.3| 677|Caenorhabditis elegans Patterned
expression site protein22, isoform a protein.
Length = 677
Score = 30.7 bits (66), Expect = 0.27
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -3
Query: 236 TTNNLSSIVQGLLAMECTLFTS 171
T NNLS IV GLL + C L TS
Sbjct: 524 TINNLSLIVSGLLTLACPLLTS 545
>U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned
expression site protein22, isoform b protein.
Length = 777
Score = 30.7 bits (66), Expect = 0.27
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -3
Query: 236 TTNNLSSIVQGLLAMECTLFTS 171
T NNLS IV GLL + C L TS
Sbjct: 579 TINNLSLIVSGLLTLACPLLTS 600
>AL021493-6|CAA16394.2| 781|Caenorhabditis elegans Hypothetical
protein Y51A2B.6 protein.
Length = 781
Score = 29.1 bits (62), Expect = 0.83
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = +3
Query: 45 ILSRFKNGLKLSNVRFACGNPYSETRKNLVLTSETKV--IVQGFTGKQGTFHSQQALDYG 218
+ FK+ +KL N+R A YSE ++L+ + +V + +G G + L
Sbjct: 280 VFEPFKDVVKLMNLREALPRQYSEHDQSLMSKNLKQVMNMAKGLKSSGGDIKRLENLRSN 339
Query: 219 TKVVGGISPKKAGQEHLGK 275
TK + + K G LG+
Sbjct: 340 TKELEMVDLKNIGDPWLGR 358
>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
protein F57C7.4 protein.
Length = 1484
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 278 GVCYCKISNECNSSSSFC 331
G C CKI N+C SS + C
Sbjct: 18 GFCECKILNQCYSSGTSC 35
>U80028-1|AAN73865.1| 369|Caenorhabditis elegans Serpentine
receptor, class w protein138 protein.
Length = 369
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -3
Query: 311 CIHCLFYSSKHRF-SKMFLSCFFW 243
CI C F SS++R +K +SC +W
Sbjct: 324 CIVCFFMSSQYRIAAKQVVSCGYW 347
>AF125452-1|AAD12828.1| 311|Caenorhabditis elegans Hypothetical
protein Y39F10C.1 protein.
Length = 311
Score = 27.9 bits (59), Expect = 1.9
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 57 FKNGLKLSNVRFACGNPYSETRKNLVLTSETKVIVQGFTGKQGTFHSQQALDYGTKVVG 233
FK+ L ++ R CGNP+ E R TK++++ + GT+ Q D G V G
Sbjct: 171 FKDDLGATSFRVYCGNPF-EGR-------STKLLLESDKNEWGTWTGDQFCDKGFAVCG 221
>AL021491-1|CAA16373.2| 319|Caenorhabditis elegans Hypothetical
protein Y44A6B.1 protein.
Length = 319
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -3
Query: 221 SSIVQGLLAMECTLFTSEPLYNNF--SFTREN*VFSSFRIRVTTCK 90
+SI+ +L + CT F PLY F S R VF F T K
Sbjct: 74 NSILSPILTINCTFFYEHPLYLTFLMSIQRIYAVFQPFNQHFTNGK 119
>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
receptor T17A3.1 protein.
Length = 1083
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 199 WLWNVPCLPVNPCTITLVSLVRTKFFRVSE*GL 101
WL NVPC+ N C V + +TK R+++ G+
Sbjct: 941 WLGNVPCVHGNLC-CRKVLISKTKTIRITDYGV 972
>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 1
protein.
Length = 1083
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 199 WLWNVPCLPVNPCTITLVSLVRTKFFRVSE*GL 101
WL NVPC+ N C V + +TK R+++ G+
Sbjct: 941 WLGNVPCVHGNLC-CRKVLISKTKTIRITDYGV 972
>Z81142-3|CAB03505.1| 491|Caenorhabditis elegans Hypothetical
protein ZK1037.6 protein.
Length = 491
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 221 SSIVQGLLAMECTLFTSEPLYNNFSFTREN*VFSS 117
SS Q L T S P + FSFTR+N F S
Sbjct: 325 SSFPQQLFGELTTFVMSTPGFAQFSFTRKNSTFQS 359
>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
protein T19D12.4b protein.
Length = 1015
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = -3
Query: 323 LSLSCIHCLFYSSKHRFSKMFLSCFFW*DTTNNLSSIVQGLLAMECTL 180
L LS + + +++KH S FL+ F +++S+ ++GLL + T+
Sbjct: 30 LILSIVFIILFATKHDSSSGFLATGFSDSNASDVSNDLRGLLKNKYTV 77
>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
protein T19D12.4a protein.
Length = 1028
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = -3
Query: 323 LSLSCIHCLFYSSKHRFSKMFLSCFFW*DTTNNLSSIVQGLLAMECTL 180
L LS + + +++KH S FL+ F +++S+ ++GLL + T+
Sbjct: 43 LILSIVFIILFATKHDSSSGFLATGFSDSNASDVSNDLRGLLKNKYTV 90
>AF067950-3|AAG24158.2| 371|Caenorhabditis elegans Serpentine
receptor, class w protein137 protein.
Length = 371
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 311 CIHCLFYSSKHRF-SKMFLSCFFW*DTTNNLSSIVQ 207
CI C F SS++R +K +SC + T N ++++Q
Sbjct: 324 CIVCFFMSSQYRIAAKQVVSCGYL--TQKNKATVIQ 357
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,232,213
Number of Sequences: 27780
Number of extensions: 134208
Number of successful extensions: 368
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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