Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_M01
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   0.43 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   4.0  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    20   9.2  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    20   9.2  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    20   9.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    20   9.2  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 24.2 bits (50), Expect = 0.43
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 114 ETRKNLVLTSETKVIVQGFTGKQGTFHSQQAL-DYGTKVVGGISPKKAGQEHL 269
           + R  L    +T ++ + ++ +       Q++ DY +  +  +  KKAG +HL
Sbjct: 287 DLRSQLEYDLQTSIMSRHYSTRAIVIEKGQSIWDYDSTYIPKVKNKKAGSKHL 339


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 259 CPAFFGEIPPTTL 221
           C A FG+I PT +
Sbjct: 103 CSALFGKIKPTAI 115


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -1

Query: 256 PAFFGEIPPTTLVP 215
           P ++G  PP ++ P
Sbjct: 120 PVYYGNFPPRSMGP 133


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -1

Query: 256 PAFFGEIPPTTLVP 215
           P ++G  PP ++ P
Sbjct: 120 PVYYGNFPPRSMGP 133


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -1

Query: 256 PAFFGEIPPTTLVP 215
           P ++G  PP ++ P
Sbjct: 120 PVYYGNFPPRSMGP 133


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/14 (35%), Positives = 9/14 (64%)
 Frame = -1

Query: 256 PAFFGEIPPTTLVP 215
           P ++G  PP ++ P
Sbjct: 353 PVYYGNFPPRSMGP 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,400
Number of Sequences: 438
Number of extensions: 1911
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)