Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L24
(266 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 29 0.15
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 28 0.19
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 26 1.0
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 1.4
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 1.4
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac... 24 3.1
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 24 3.1
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 23 5.5
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 23 5.5
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 23 5.5
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 23 5.5
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 23 5.5
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 23 7.2
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 23 7.2
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 23 7.2
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 23 9.6
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 23 9.6
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 23 9.6
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 23 9.6
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 28.7 bits (61), Expect = 0.15
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 195 IPEAVHWMTSRQLVATRQPPTGTIRQRPCPCIALVPDSRLSSLFP-QLVAAIGAHQ 31
IP+A+H + + P G + QR PDSRLSS+ QL+A+ A+Q
Sbjct: 191 IPDALHTTQNGTTIHVTGTPPGAVSQRS------EPDSRLSSMNEMQLLASAAANQ 240
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 0.19
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 141 PPTGTIRQRPCPCIALVPDSRLSSLFP--QLVAAIGAHQQQRRR 16
PP G + P P A +P + + P Q + A + QQ+RR
Sbjct: 292 PPPGMVMASPSPAAATIPGAPVMPNIPFYQTINAQNGYSQQQRR 335
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 1.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 40 TDGGDKLRKQ*RKTRVWNKSYARTR 114
TD GDK+RK +R W + A+ +
Sbjct: 647 TDQGDKMRKMLELSRKWKEEMAKKK 671
>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.4 bits (53), Expect = 1.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 194 IQAIRCPAGLFFDIEKQTCDWKE 262
++A+RCP L+ + QT WK+
Sbjct: 32 VRALRCPIWLWPTYDAQTIPWKK 54
>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 156 QAVATSSNVPPRVFKLSVVPLVCSST 233
+ A+ +N PP V +L VVP VC +T
Sbjct: 193 KVAASPANFPPLVLQLLVVP-VCDNT 217
>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 24.2 bits (50), Expect = 3.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 13 CSPALLLMGTDGGDKLRKQ*RKTRVWNKSYARTRTLA 123
CSP + L+G+ G K KT V+ +++ +R LA
Sbjct: 194 CSPTVTLLGSRGFSKR----SKTSVFREAFTDSRVLA 226
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 24.2 bits (50), Expect = 3.1
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 99 LCKDKDAGEWFRLVAGEWRQAVATSSN 179
L + + EW R +W +AV S N
Sbjct: 145 LYAEPNIAEWIRRNVDDWEEAVVVSKN 171
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 23.4 bits (48), Expect = 5.5
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +1
Query: 88 WNKSYARTRT--LANGSGWWLASGDKLS 165
W KS + L N GWW+ +G LS
Sbjct: 590 WAKSEENKQIYLLGNPIGWWIIAGTVLS 617
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 23.4 bits (48), Expect = 5.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 248 KSVSQCRRTNQRDNG*LEYPRRYI 177
K+ C R N ++ L YPR+Y+
Sbjct: 446 KTGKSCGRINTKNGVELVYPRKYV 469
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 23.4 bits (48), Expect = 5.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 120 GEWFRLVAGEWRQAVATSSNVPPRVFKLSVVPLVCSSTLRNRL 248
GE + + T+SN+ RV +LSV+ + S+ R +L
Sbjct: 39 GEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKL 81
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 23.4 bits (48), Expect = 5.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 172 HPMYRLGYSSY 204
HPMY +GY+ Y
Sbjct: 294 HPMYSVGYAGY 304
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 23.4 bits (48), Expect = 5.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 85 VWNKSYARTRTLANGSGWWLASGD 156
+W ++ TLANG G ASG+
Sbjct: 300 IWKNTHPFLTTLANGHGVMDASGN 323
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 23.0 bits (47), Expect = 7.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 27 VADGHRWRRQAEETVKKDESLEQELCKDKDAGE 125
++ RW + EE K + LEQ+ D+D E
Sbjct: 282 ISPQERWIDKKEEYDKYEWELEQKSTMDEDENE 314
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +1
Query: 136 WWLASGDKLSRRHPMYRLGYSSY 204
WW G + + Y LGY +Y
Sbjct: 362 WWFKRGATKNDSNSYYGLGYMAY 384
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.0 bits (47), Expect = 7.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 54 QAEETVKKDESLEQELCKD 110
Q EET+ D ++E+E KD
Sbjct: 1502 QTEETLDADNTMEEEPSKD 1520
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 22.6 bits (46), Expect = 9.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 253 VASLFLNVEEQTSGTTDSLNTRGGTLDDVATACRHSPATNRN 128
+AS NV S TDS R +LD + S +NRN
Sbjct: 309 LASAATNVTGYVS-ETDSRPNRANSLDSAVLLVQSSNKSNRN 349
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 22.6 bits (46), Expect = 9.6
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 126 WFRLVAGEWRQA 161
WFR GEW++A
Sbjct: 113 WFRREMGEWKKA 124
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 22.6 bits (46), Expect = 9.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 123 EWFRLVAGEWRQAVATSSNVPPRVFKLSVVPLVCSS 230
+W R EW A+ + P + S V LVC+S
Sbjct: 503 DWSR--KSEWAMALPMENESPVTISLSSSVVLVCTS 536
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 22.6 bits (46), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 181 YRLGYSSYPLSRWFVLRH*ET 243
Y+ GYSSYP+ L H +T
Sbjct: 219 YQAGYSSYPVRSSPQLSHEDT 239
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,121,208
Number of Sequences: 5004
Number of extensions: 20141
Number of successful extensions: 65
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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