Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L23
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   220   5e-58
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   218   2e-57
11_04_0329 - 16442298-16443734                                         30   0.96 
03_01_0099 + 778521-778736,779521-779775,779831-779924,780064-78...    29   2.2  
08_02_1129 - 24513568-24514296,24515380-24515817                       28   5.1  
01_01_0205 + 1764034-1767601,1767934-1767944                           27   6.8  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  220 bits (538), Expect = 5e-58
 Identities = 103/158 (65%), Positives = 125/158 (79%), Gaps = 2/158 (1%)
 Frame = +3

Query: 48  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 227
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 228 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 401
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 402 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRY 515
            ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+Y
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKY 158


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  218 bits (533), Expect = 2e-57
 Identities = 102/158 (64%), Positives = 124/158 (78%), Gaps = 2/158 (1%)
 Frame = +3

Query: 48  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 227
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 228 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 401
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 402 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRY 515
            ++PGLTD E PR  GPKRASKIRKLFNL K+DDVR+Y
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKY 158


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 22/69 (31%), Positives = 28/69 (40%)
 Frame = -3

Query: 508 RTSSSFFKLNNLRILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLASTMQPRTDL 329
           R +   F  + L    A L P   G    +   + CAP   M       LAS+  P + L
Sbjct: 46  RLADDAFAASRLLAAHAALSPP--GAVLRLLASLPCAPNSFMLNITLRALASSPDPASAL 103

Query: 328 RFLSPSRRG 302
           RF S  RRG
Sbjct: 104 RFFSLLRRG 112


>03_01_0099 +
           778521-778736,779521-779775,779831-779924,780064-780116,
           780301-780339,781091-781159,781275-781445,781533-781598,
           782533-782601,782993-783060,783308-783430,784095-784228,
           784412-784506,784600-784644,784755-784814,785548-785599,
           785674-785714,785857-785921,786704-786755,787021-787092
          Length = 612

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 450 DLDGGELHRQSVQEFPVHLCGQ*PGLRLKG*HQQCNHEQTCVSS 319
           D+D   ++    + F  +  GQ P + L G H + NHEQTCV++
Sbjct: 333 DVDNDRINEADKEPFSGNHFGQ-PKI-LSGKHFRLNHEQTCVTA 374


>08_02_1129 - 24513568-24514296,24515380-24515817
          Length = 388

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 165 DLHQLQRPYAFHR-RYGACAHPPLQITSD--IPLPGMKRSTSXCLVPP 31
           DL++L R Y F R R      P      D  + L G KR TS C +PP
Sbjct: 29  DLYELLRNYVFRRSRDDPFVLPGHYSDPDSLVSLWGPKRDTSRCRIPP 76


>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 493 FFKLNNLRILDARLGPRRRGTSPSVSPGISCAPLRTMTRAKTERLAST 350
           FF+L NLRILD        G  P V   +    L     +  +R++S+
Sbjct: 304 FFQLKNLRILDLSFNMNLLGHLPKVPTSLETLRLEGTNFSYAKRISSS 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,056,226
Number of Sequences: 37544
Number of extensions: 327354
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)