Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L22
(438 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 162 3e-39
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 161 6e-39
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 121 8e-27
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 114 9e-25
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 104 1e-21
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 97 2e-19
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 95 8e-19
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 93 2e-18
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 91 7e-18
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 87 1e-16
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 77 1e-13
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 73 3e-12
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 73 4e-12
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 62 7e-09
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 60 3e-08
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 57 1e-07
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 57 2e-07
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 51 9e-06
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 45 8e-04
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 42 0.004
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 41 0.010
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 41 0.013
UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4; Pyroba... 40 0.031
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 38 0.071
UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilu... 37 0.16
UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga... 36 0.29
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 36 0.50
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 35 0.66
UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 35 0.66
UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2; Thermo... 34 1.5
UniRef50_A7IAJ1 Cluster: Ribosomal protein S3Ae; n=1; Candidatus... 33 2.0
UniRef50_Q00U98 Cluster: Chromosome 16 contig 1, DNA sequence; n... 33 3.5
UniRef50_Q4D9C8 Cluster: Putative uncharacterized protein; n=1; ... 32 4.7
UniRef50_A1ZBM9 Cluster: CG15904-PA; n=2; Sophophora|Rep: CG1590... 32 6.2
UniRef50_Q6FNX0 Cluster: DNA damage checkpoint protein LCD1; n=1... 32 6.2
UniRef50_Q21148 Cluster: Putative uncharacterized protein; n=2; ... 31 8.1
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 162 bits (394), Expect = 3e-39
Identities = 79/134 (58%), Positives = 98/134 (73%), Gaps = 5/134 (3%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
G++LRVFCIGFT KD++SQRKTCYAQH+Q++ IR KM II R++TS++L+ VV KL+PD
Sbjct: 135 GFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPD 194
Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXDKS---- 354
SIAKDIEKAC +YPL DV IRKVKVLK+PRF++S LM +
Sbjct: 195 SIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVV 254
Query: 355 -ERPEGYEPPVQES 393
+RPEGYEPPVQ S
Sbjct: 255 VDRPEGYEPPVQAS 268
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 161 bits (391), Expect = 6e-39
Identities = 79/132 (59%), Positives = 95/132 (71%), Gaps = 3/132 (2%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
GY+LR+FC+GFT K RKT YAQH QVR IRKKM EI+TR+V +++L+EVVNKLIPD
Sbjct: 132 GYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPD 191
Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXD---KSE 357
SI KDIEKAC IYPL DV +RKVK+LK+P+FE+ KLM + K E
Sbjct: 192 SIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVE 251
Query: 358 RPEGYEPPVQES 393
R +GYEPPVQES
Sbjct: 252 RADGYEPPVQES 263
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 121 bits (291), Expect = 8e-27
Identities = 55/97 (56%), Positives = 73/97 (75%)
Frame = +1
Query: 10 YVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDS 189
Y LR+FCI FT K +KTCYAQ +Q+R IR+KM EI+T TS +L+E+V K IP+S
Sbjct: 528 YTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPES 587
Query: 190 IAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 300
I ++IEKA IYPL++V IRKVK+LK P+F++ KLM
Sbjct: 588 IGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLM 624
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 114 bits (274), Expect = 9e-25
Identities = 57/100 (57%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Frame = +1
Query: 103 IRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 282
IRKKM EI+TR+V +++L+EVVNKLIPDSI KD+EKAC IYPL DV +RKVK+LK+P+F
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDVEKACQSIYPLHDVFVRKVKMLKKPKF 170
Query: 283 EISKLMXXXXXXXXXXXXXXXD---KSERPEGYEPPVQES 393
E+ KLM + K ER +GYE PVQES
Sbjct: 171 ELGKLMELHGEGCSSGKATGDETGVKVERADGYELPVQES 210
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 104 bits (249), Expect = 1e-21
Identities = 48/97 (49%), Positives = 72/97 (74%)
Frame = +1
Query: 10 YVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDS 189
Y+LR+F I T + +KT YA +Q+RAIR+KM EII R+ ++ L+++ NKLIP+
Sbjct: 133 YLLRLFAIAVTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNKLIPEV 192
Query: 190 IAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 300
I ++IEKA GIYPL++V IRKVK+LK+P+F++ L+
Sbjct: 193 IGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLL 229
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 96.7 bits (230), Expect = 2e-19
Identities = 55/129 (42%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Frame = +1
Query: 10 YVLRVFCIGFT-NKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
Y+L +FC+G+T N T R+ AQ+ QV I +I+ D ++L+EV+NKL+PD
Sbjct: 117 YLLCLFCVGYTTNVTTRYARQLVCAQYQQVHQIWLITIQIM--DQRRTDLKEVLNKLVPD 174
Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXDKSERPE 366
++ KD+EKAC IYPL DV +RKVK+L++P+ ++ KL KS+R
Sbjct: 175 NVGKDVEKACQFIYPLHDVFVRKVKILQKPKLDLGKL----PELHALGLHGSHRKSDR-- 228
Query: 367 GYEPPVQES 393
YEPPVQES
Sbjct: 229 -YEPPVQES 236
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 94.7 bits (225), Expect = 8e-19
Identities = 47/129 (36%), Positives = 73/129 (56%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
GY LR F I FT K Q+ YAQ T+++ +R ++ E++ R+V +L+ VV KLIPD
Sbjct: 58 GYTLRFFVIAFTKKQE-DQKSHAYAQTTRIKKLRAEIVEVVQREVARCDLKSVVQKLIPD 116
Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXDKSERPE 366
SI +D I+PL +RKVKVLK+P+ ++ +++ + RP+
Sbjct: 117 SIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRIL---ELHSEGKADEFGEGVPRPD 173
Query: 367 GYEPPVQES 393
YEPPV ++
Sbjct: 174 HYEPPVVDA 182
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 93.5 bits (222), Expect = 2e-18
Identities = 41/97 (42%), Positives = 67/97 (69%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
GY+LR+F I FT QRKT YAQ +Q++ IRKK+ EI+ ++V+ + +++ +
Sbjct: 131 GYILRIFVIAFTKSIKNQQRKTTYAQRSQIKDIRKKIVEIVLKEVSKKSITQLLGFFNQE 190
Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKL 297
S+AK+I KA I+PL+++ +RKVK++KRP+ + KL
Sbjct: 191 SLAKEIGKATRTIFPLQNITLRKVKLVKRPKVDAQKL 227
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 91.5 bits (217), Expect = 7e-18
Identities = 46/78 (58%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Frame = +1
Query: 169 NKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXD 348
NKLIPDSI KDIEKAC IYPL DV +RKVK+LK+P+FE+ KLM +
Sbjct: 1 NKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGDSSSSGKAIGDE 60
Query: 349 ---KSERPEGYEPPVQES 393
K ER EGYEPPVQES
Sbjct: 61 TGAKVERAEGYEPPVQES 78
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 87.4 bits (207), Expect = 1e-16
Identities = 43/100 (43%), Positives = 62/100 (62%), Gaps = 3/100 (3%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTL---SQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKL 177
GY++RVF + FT K + S TCYA+ +QVRAIR+K+ IT + + E L
Sbjct: 135 GYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNL 194
Query: 178 IPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKL 297
I + K IEK I+PL+++ IRKVKVLKRP+ + +K+
Sbjct: 195 IGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKI 234
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 77.4 bits (182), Expect = 1e-13
Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 14/111 (12%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI-- 180
GY LRVF I FT K ++KT YA+ ++V+AIRKKM +I+T V+S++L+ VV+ LI
Sbjct: 131 GYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGV 190
Query: 181 ------------PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKL 297
++A+ I I+P+ +V IRKVKVLK P+ + +KL
Sbjct: 191 SLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKL 241
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 72.9 bits (171), Expect = 3e-12
Identities = 31/88 (35%), Positives = 57/88 (64%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
G V RVF +G T + +KTCY +H+ + IRK M ++I +++ ++++++ KL +
Sbjct: 84 GSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCDVQKIMKKLANE 143
Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLK 270
++ K IE+ I+PL++ C+RKVK +K
Sbjct: 144 TVGKRIEELGSEIFPLQNCCVRKVKTIK 171
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 72.5 bits (170), Expect = 4e-12
Identities = 31/100 (31%), Positives = 62/100 (62%)
Frame = +1
Query: 1 ARGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 180
A GY +R+F + FT Q + CYA+ V+ +R ++ ++I R ++ +++E V+ L
Sbjct: 133 ADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSLLT 192
Query: 181 PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 300
+ ++ + + C+ I PLR++ IRKV+V++ P+F+ L+
Sbjct: 193 RNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALL 232
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 61.7 bits (143), Expect = 7e-09
Identities = 32/91 (35%), Positives = 51/91 (56%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
GY+LRVF I FT++ +RK C+ + +R +R + E + ++ + +V KL
Sbjct: 132 GYLLRVFVIAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNELGKVSIPVLVTKLSNF 191
Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPR 279
+ + +A I RDV IR+VKV+KRPR
Sbjct: 192 EVNAKLTEALQKITMCRDVMIRRVKVVKRPR 222
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 59.7 bits (138), Expect = 3e-08
Identities = 27/88 (30%), Positives = 54/88 (61%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
GY L++F I + K + KT Y +Q RA+R+++ +II ++ + ++++ ++++
Sbjct: 128 GYFLKLFLIAQSKKPKNMKSKTVYINSSQKRALRRRITDIIIKEGINMDIKDFIHRIYSL 187
Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLK 270
I + IE C I+P+ V IRK+KV++
Sbjct: 188 KIYEKIEINCSKIFPIHQVNIRKIKVVE 215
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 57.2 bits (132), Expect = 1e-07
Identities = 29/92 (31%), Positives = 48/92 (52%)
Frame = +1
Query: 1 ARGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 180
A G++LR+F IGFT K S + YA + R +R M + +T ++ + ++ +
Sbjct: 126 ADGFILRLFTIGFTKKLANSHKNHTYANSHKARQVRDVMIKALTDACEANGVEQLCKDFV 185
Query: 181 PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 276
+ I +I + C I + V I KVKV+K P
Sbjct: 186 DEKIENEIVEKCKQICQIESVYITKVKVIKAP 217
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 56.8 bits (131), Expect = 2e-07
Identities = 25/66 (37%), Positives = 43/66 (65%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
G+++R+FCIGFT++ + +KT YA+ Q++ IRK M +IT++ S EL + V+ L
Sbjct: 134 GHLIRIFCIGFTSRKSNQIKKTSYAKSAQIKKIRKIMNNLITKEAASRELTQFVDYLKKT 193
Query: 187 SIAKDI 204
+ K +
Sbjct: 194 NFQKKL 199
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 51.2 bits (117), Expect = 9e-06
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +1
Query: 235 RDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXD---KSERPEGYEPPVQES 393
R +C++KVK+LK+P+FE+ KLM + K ER EGYEPPVQES
Sbjct: 63 RVMCLKKVKMLKKPKFELGKLMELHGDSSSSGKAIGDETGAKVERAEGYEPPVQES 118
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 44.8 bits (101), Expect = 8e-04
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIP- 183
GY +RV + FT + A+ +Q RAIRK+M ++I + + E + + +
Sbjct: 107 GYKVRVAGLAFTTRR---------AKTSQQRAIRKEMFKVIEENAKECDFDEFIRRCLSI 157
Query: 184 ---DSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 276
+SI + I++A IYP+R IRK +VL+ P
Sbjct: 158 SEEESIPEQIKEAGRKIYPIRQAEIRKTEVLEEP 191
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 42.3 bits (95), Expect = 0.004
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +1
Query: 103 IRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 282
IRKK+ E +T + E V +I D +++ K IYP+R + IRK +VL P
Sbjct: 141 IRKKIQEYLTEKARAMTFSEYVKYIISDDAPRELSKELKVIYPVRRIEIRKSEVLHFPEE 200
Query: 283 EISKLM 300
+I +L+
Sbjct: 201 KIVELV 206
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 41.1 bits (92), Expect = 0.010
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI-- 180
GY LRV + FT R+ C + +Q AIRK M EI+ + S L E++ ++
Sbjct: 111 GYGLRVTAMAFT-------RQRC--KTSQKSAIRKVMQEIVEQKARESTLDELIQLMVFS 161
Query: 181 --PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 276
S+A I+++ IYPLR V I K K+L P
Sbjct: 162 DHEGSLAYLIDESARKIYPLRKVEIAKSKLLWVP 195
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 40.7 bits (91), Expect = 0.013
Identities = 30/92 (32%), Positives = 47/92 (51%)
Frame = +1
Query: 1 ARGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 180
A GY LRV + FT + + KT +Q RAIR M +I+ +S + + + +
Sbjct: 115 ADGYKLRVKSVVFT----VRRCKT-----SQKRAIRAIMRQIVVEKASSLNFVQFLQECV 165
Query: 181 PDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 276
+ +I K IYP+R V IRK+++L P
Sbjct: 166 LGKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197
>UniRef50_Q8ZT21 Cluster: 30S ribosomal protein S3Ae; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S3Ae -
Pyrobaculum aerophilum
Length = 221
Score = 39.5 bits (88), Expect = 0.031
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = +1
Query: 91 QVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 270
Q A+RKKM E + + + + + +++ ++A D+ I P+R V I K+KVLK
Sbjct: 142 QKSAMRKKMIETLVKKAAELDSGQFLKEILEGTLAADLFIVAKKIAPMRKVEIAKIKVLK 201
Query: 271 RP 276
P
Sbjct: 202 YP 203
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 38.3 bits (85), Expect = 0.071
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = +1
Query: 64 RKTCY----AQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYP 231
+ TC+ A+ +Q++AIR+ M +I+ + + ++ + + I ++ I + IYP
Sbjct: 120 KPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYP 179
Query: 232 LRDVCIRKVKVLKRP 276
LR V IRK +V P
Sbjct: 180 LRRVEIRKTQVEAMP 194
>UniRef50_A1RXX5 Cluster: Ribosomal protein S3Ae; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S3Ae - Thermofilum
pendens (strain Hrk 5)
Length = 207
Score = 37.1 bits (82), Expect = 0.16
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +1
Query: 88 TQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 267
+Q +AIR+ M +II+ S + + + + ++A +++ IYP++ V + K+KVL
Sbjct: 130 SQKKAIRRIMFDIISEKAASLDFDTFIQQAVIGTMATEMQMQAKKIYPIKKVEVYKIKVL 189
Query: 268 KRPRFEI 288
P EI
Sbjct: 190 -TPTTEI 195
>UniRef50_A3H9G4 Cluster: Ribosomal protein S3Ae; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3Ae -
Caldivirga maquilingensis IC-167
Length = 221
Score = 36.3 bits (80), Expect = 0.29
Identities = 22/64 (34%), Positives = 31/64 (48%)
Frame = +1
Query: 88 TQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 267
T IRK + + + + S+ +V I I D+ IYPLR V I K+KVL
Sbjct: 137 THKHLIRKSIMDRLDKVGQESDFDSLVRDSIMGKIQVDLFNVAKKIYPLRKVEIIKIKVL 196
Query: 268 KRPR 279
+ PR
Sbjct: 197 EYPR 200
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 35.5 bits (78), Expect = 0.50
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +1
Query: 79 AQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKV 258
A +Q +AIR+ M +++ ++++ ++ ++ I IYPLR V I+K
Sbjct: 126 ADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKT 185
Query: 259 KVLKRP 276
+ RP
Sbjct: 186 TLEARP 191
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 35.1 bits (77), Expect = 0.66
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 70 TCYAQHT-QVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVC 246
T Y H Q IRK M +++ + E V ++I ++A +I I PLR
Sbjct: 130 TAYRVHREQATTIRKIMEDVVKKTAEGKTFDEFVQEMIFGNLANNIFNEAKKIAPLRKAE 189
Query: 247 IRKVKVLKRPRFEISK 294
I K KVL P + K
Sbjct: 190 IEKSKVLFAPLIKEGK 205
>UniRef50_Q6KYU3 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasmatales|Rep: 30S ribosomal protein S3Ae -
Picrophilus torridus
Length = 209
Score = 35.1 bits (77), Expect = 0.66
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 103 IRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKR 273
+R K+ I S L E+ +I D++ DI +YP++ + IRK +VL R
Sbjct: 137 VRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIVDTLKDVYPIKKIEIRKSEVLGR 193
>UniRef50_Q978Z2 Cluster: 30S ribosomal protein S3Ae; n=2;
Thermoplasma|Rep: 30S ribosomal protein S3Ae -
Thermoplasma volcanium
Length = 215
Score = 33.9 bits (74), Expect = 1.5
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +1
Query: 85 HTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKV 264
+T+ IRK + + I S E V LI D I D+ A IYPL+ + +RK ++
Sbjct: 132 NTKKFQIRKVLTDFILNKGLSLPYSEFVRYLIGDDIYNDMISATKDIYPLKKIEVRKSEL 191
Query: 265 L 267
+
Sbjct: 192 V 192
>UniRef50_A7IAJ1 Cluster: Ribosomal protein S3Ae; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S3Ae -
Methanoregula boonei (strain 6A8)
Length = 201
Score = 33.5 bits (73), Expect = 2.0
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = +1
Query: 19 RVFC-IGFTNKDTLSQRKT--CY----AQHTQVRAIRKKMCEIITRDVTSSELREVVNKL 177
R+ C + KD R T CY A Q A+R + + + +L +VN +
Sbjct: 103 RIDCHVQVVTKDNKKVRLTISCYTFARANIAQEHALRNAITAGLVAQAQAWDLNTLVNGV 162
Query: 178 IPDSIAKDIEKACHGIYPLRDVCIRKVKV 264
+ I+KD+ K +YP R V I K KV
Sbjct: 163 VSGEISKDLFKLVKTLYPTRRVEIIKSKV 191
>UniRef50_Q00U98 Cluster: Chromosome 16 contig 1, DNA sequence; n=2;
Ostreococcus tauri|Rep: Chromosome 16 contig 1, DNA
sequence - Ostreococcus tauri
Length = 537
Score = 32.7 bits (71), Expect = 3.5
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -3
Query: 394 RSPEPVVRNPLAFLTCLQPLPVYRCRLHRAAPSAWRFQNAAS 269
R P P+VR +L+ LQ LP + C LHR S + + +AS
Sbjct: 407 REPVPIVRERKRWLSMLQRLPRWEC-LHRRTRSECKLRRSAS 447
>UniRef50_Q4D9C8 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 344
Score = 32.3 bits (70), Expect = 4.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 193 RWSQESACSRLHEALNWSHR 134
RW S+ SR+H AL+WSHR
Sbjct: 67 RWQGRSSESRVHRALSWSHR 86
>UniRef50_A1ZBM9 Cluster: CG15904-PA; n=2; Sophophora|Rep:
CG15904-PA - Drosophila melanogaster (Fruit fly)
Length = 632
Score = 31.9 bits (69), Expect = 6.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 249 NADITKWVDTVTRLFDILSDGVRNQLVHDFTKL*TGHIARDDFTHFFPDC 100
+A++T +T L D++S GV L+H FT++ T + + DC
Sbjct: 265 SANVTADYLNMTNLLDLVSQGVYETLIHSFTEITTKFVVSYSYPIGINDC 314
>UniRef50_Q6FNX0 Cluster: DNA damage checkpoint protein LCD1; n=1;
Candida glabrata|Rep: DNA damage checkpoint protein LCD1
- Candida glabrata (Yeast) (Torulopsis glabrata)
Length = 667
Score = 31.9 bits (69), Expect = 6.2
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = -1
Query: 231 WVDTVTRLFDILSDGVRNQLVHDFTKL*TGHIARDDFTHFFPDCADLGMLSVACLALAER 52
W D +TRL+ +L + N V D T HI D F F+ ++G SV+ L LA+
Sbjct: 368 WSDLLTRLYQLLGKRILNFHVFDDTNTNNMHI--DRFFDFYSLLRNMGTNSVSPL-LAQL 424
Query: 51 ILVGE 37
+ GE
Sbjct: 425 VTRGE 429
>UniRef50_Q21148 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 308
Score = 31.5 bits (68), Expect = 8.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 306 QLHQLGDFKTRPLQYFHLPNADITKWVDTVT 214
QLHQ+ + PLQ+ H PN D+ +D T
Sbjct: 59 QLHQINSAEQSPLQFTHQPNCDLIVVLDEQT 89
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,802,438
Number of Sequences: 1657284
Number of extensions: 6980329
Number of successful extensions: 18650
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 18311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18636
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -