Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L22
         (438 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   2.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   5.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   5.1  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   5.1  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   5.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 201  YRKGVSRYLP 230
            YRKG+ +YLP
Sbjct: 1410 YRKGLGKYLP 1419



 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 201  YRKGVSRYLPT 233
            YR+GV +YLP+
Sbjct: 1835 YRQGVGKYLPS 1845


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 244 CIRKVKVLKRPRFEIS 291
           C+R     KRP+FE S
Sbjct: 192 CLRTCSSAKRPKFENS 207


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 48  GYAQPTQDMLRSAYPSPRNQEK 113
           GY+  + D  +   P+PR QE+
Sbjct: 165 GYSADSCDSKKKKGPTPRQQEE 186


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 212 AFSISLAMESGISLF 168
           AFS+ L +  G+SLF
Sbjct: 250 AFSVQLLVSIGVSLF 264



 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 203 ISLAMESGISLFTTSRSSELVTSRVMISHI 114
           + +A+   ++LFT      L+ S  M+SH+
Sbjct: 97  VMMALTLIVTLFTFLARGTLIKSFDMLSHV 126


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 212 AFSISLAMESGISLF 168
           AFS+ L +  G+SLF
Sbjct: 250 AFSVQLLVSIGVSLF 264



 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 203 ISLAMESGISLFTTSRSSELVTSRVMISHI 114
           + +A+   ++LFT      L+ S  M+SH+
Sbjct: 97  VMMALTLIVTLFTFLARGTLIKSFDMLSHV 126


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 36  FHQQGYAQPTQDMLRSAYPSPRNQ 107
           FH    +  T   L+ +Y SP+ Q
Sbjct: 63  FHSSSPSSDTSQDLQHSYQSPQTQ 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,659
Number of Sequences: 336
Number of extensions: 1715
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9775509
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)