Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L22
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   104   5e-24
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   101   5e-23
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   0.72 
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   2.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   3.9  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    25   6.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    24   8.9  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  104 bits (250), Expect = 5e-24
 Identities = 47/98 (47%), Positives = 70/98 (71%)
 Frame = +1

Query: 7   GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
           GY+ RVF IGFT +     +KT YAQ +Q+RAIR+KM ++I    +S  +RE+V KLIP+
Sbjct: 132 GYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPE 191

Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 300
            I ++IE+A   I+PL++V +RKVK+LK P+ +  KL+
Sbjct: 192 VIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLL 229


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  101 bits (242), Expect = 5e-23
 Identities = 45/98 (45%), Positives = 68/98 (69%)
 Frame = +1

Query: 7   GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
           GY+ R+F IGFT++     +KT YAQ +Q+RAI +KM ++I        ++E+V KLIP+
Sbjct: 132 GYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPE 191

Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 300
            I + IEKA + IYPL++V +RKVK+LK P+ +  KL+
Sbjct: 192 VIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLL 229


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 121 EIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 252
           E +  D     +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 25  FCIGFTNKDTLSQRKTCY 78
           FC G  NKDT+   K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 10   YVLRVFCIGFTNKDTLSQRKTC 75
            YV ++   G  NK+T S RKTC
Sbjct: 1721 YVTQLILSGLLNKNTNSIRKTC 1742


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 11  MSYVFSASVSPTRIRSANARHATLSIPKSAQSGKKCVKSSRA 136
           +S + SA  SPT+  +  +   + SIPK+ +  +   ++S A
Sbjct: 396 LSLIPSAVSSPTKANTNKSHQRSFSIPKATKDSQTPSENSAA 437


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 3    TRICPTCFLHRFHQ 44
            +R C T FLHRF++
Sbjct: 1254 SRYCTTSFLHRFYE 1267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,674
Number of Sequences: 5004
Number of extensions: 29562
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)