Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L22
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 118 3e-27
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 115 1e-26
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 113 6e-26
01_01_1007 + 7979642-7980577 30 0.93
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 1.6
03_02_0697 - 10487661-10488342,10490474-10490556 28 2.9
06_01_0768 + 5742938-5743196,5743291-5744729 27 5.0
06_03_1024 - 26958473-26958661,26958750-26958815,26959234-269593... 27 6.6
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 27 6.6
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 27 6.6
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 27 8.7
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 118 bits (283), Expect = 3e-27
Identities = 51/98 (52%), Positives = 75/98 (76%)
Frame = +1
Query: 7 GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
GY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ +S +L+E+V+K IP+
Sbjct: 132 GYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPE 191
Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 300
I K+IEKA I+PL++V +RKVK+LK P+F++ KLM
Sbjct: 192 VIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLM 229
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 115 bits (277), Expect = 1e-26
Identities = 50/97 (51%), Positives = 74/97 (76%)
Frame = +1
Query: 10 YVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDS 189
Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ +S +L+E+V+K IP+
Sbjct: 133 YMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEV 192
Query: 190 IAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 300
I K+IEKA I+PL++V +RKVK+LK P+F++ KLM
Sbjct: 193 IGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLM 229
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 113 bits (272), Expect = 6e-26
Identities = 49/97 (50%), Positives = 74/97 (76%)
Frame = +1
Query: 10 YVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDS 189
Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K IP+
Sbjct: 133 YMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEV 192
Query: 190 IAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 300
I K+IEK+ I+PL++V IRKVK+LK P+F++ KLM
Sbjct: 193 IGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLM 229
>01_01_1007 + 7979642-7980577
Length = 311
Score = 29.9 bits (64), Expect = 0.93
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 424 FSHYILFYFRRSPEPVVRNPLAFLTCLQPLPV 329
FS Y L F R P P+ R PL+ +TC PV
Sbjct: 37 FSVYAL-EFLRPPYPIDRTPLSMITCATATPV 67
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 160 EVVNKLIPDSIAKDIEKACHGIYPLRD 240
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>03_02_0697 - 10487661-10488342,10490474-10490556
Length = 254
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 26 SASVSPTRIRSANARHATLSIPKSAQSGKKCVKSSR 133
SA+ + I S+N+ HA+ S P S KC+ SR
Sbjct: 203 SAAKTTAAISSSNSNHASSSAPPPPPSKPKCLWQSR 238
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 391 SPEPVVRNPLAFLTCLQPLPVYRCRLHRAA 302
+P+P R ++ CL P Y CR+ R A
Sbjct: 511 TPDPPCRRAVSMEPCLHGPPFYDCRVKRGA 540
>06_03_1024 -
26958473-26958661,26958750-26958815,26959234-26959303,
26959526-26959773,26959938-26960029,26960726-26960871,
26961001-26961185,26961721-26961838,26961948-26962087
Length = 417
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 109 KKMCEIIT--RDVTSSELREVVNKLIPDSI 192
+++C T +DV SS++++ +NK PD +
Sbjct: 191 QQVCSFYTWRKDVKSSDIKDAINKAAPDKL 220
>04_04_1157 -
31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -1
Query: 351 LVSNLSPFTAAAFTVQLHQLGDFKTRPLQYFHLPNADITKWVDTVTRLFDILSDGVRNQL 172
L S +SP + + + L G++ T LQ+ D W R+FDI G R +
Sbjct: 411 LTSRMSPSSLRYYGIGLEN-GNY-TVTLQFAEFGIEDTQSWKSLGRRVFDIYVQGERKEK 468
Query: 171 VHDFTK 154
D K
Sbjct: 469 NFDIRK 474
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +1
Query: 85 HTQVRAIRKKMCEIITRDVTSSELREVVNKLIP---DSIAKDIE 207
H Q + RK++ ++ + TSS+LRE+ ++L+ ++ +KD++
Sbjct: 1956 HMQSQTKRKQIDHLMELNSTSSQLREIFSELLHHLLNTFSKDVD 1999
>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
Length = 1054
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 342 NLSPFTAAAFTVQLHQLGDFKTRPLQYFHLPNADITKWV 226
NL A TV H DFK L Y +PN D+ KW+
Sbjct: 802 NLVKIITACSTVD-HYGNDFKA--LVYEFMPNRDLDKWL 837
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,345,222
Number of Sequences: 37544
Number of extensions: 201582
Number of successful extensions: 533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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