Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L22
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   124   3e-29
U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical pr...    31   0.28 
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  124 bits (299), Expect = 3e-29
 Identities = 59/128 (46%), Positives = 83/128 (64%)
 Frame = +1

Query: 7   GYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPD 186
           GY LRVF I FT K     +KT Y + +++R IR +M   I ++VT  +L+EVV+KLIPD
Sbjct: 130 GYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPD 189

Query: 187 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXXDKSERPE 366
           SI KDIEK C  +YPL++V IRKVK++KRP+ ++ +L                +K +RP+
Sbjct: 190 SIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRL--HDLHGDSITVGADGEKVDRPD 247

Query: 367 GYEPPVQE 390
            YEPPVQ+
Sbjct: 248 DYEPPVQQ 255


>U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.4 protein.
          Length = 308

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 306 QLHQLGDFKTRPLQYFHLPNADITKWVDTVT 214
           QLHQ+   +  PLQ+ H PN D+   +D  T
Sbjct: 59  QLHQINSAEQSPLQFTHQPNCDLIVVLDEQT 89


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 76   YAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 180
            Y   T     ++   E+IT D+ +SEL++ + KL+
Sbjct: 2954 YRNRTDTSIDKRSKPEVITEDLETSELQDEIMKLV 2988


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 76   YAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLI 180
            Y   T     ++   E+IT D+ +SEL++ + KL+
Sbjct: 2954 YRNRTDTSIDKRSKPEVITEDLETSELQDEIMKLV 2988


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 139 VTSSELREVVNKLIPDSIAK 198
           V S  LR+VV K +PD +AK
Sbjct: 208 VISDRLRKVVEKFLPDDVAK 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,652,922
Number of Sequences: 27780
Number of extensions: 169275
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)