Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L22
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.9  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 60  PTQDMLRSAYPSPRNQEKNV*NHHARCD 143
           P+  +L S      N+EK+  NHH   D
Sbjct: 44  PSPSLLTSQPHQDHNKEKSKNNHHCNQD 71


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = -3

Query: 382 PVVRNPLAFLTCLQPLP--VYRCRLHR 308
           P VRN   ++ C +P P  V+   L R
Sbjct: 208 PAVRNEAFYICCEEPYPDIVFNITLRR 234


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 100 RGLGYAERSMSC 65
           +G+GYA   MSC
Sbjct: 60  KGIGYAAAVMSC 71


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 424 FSHYILFYFRR 392
           + H +LFYFR+
Sbjct: 8   YRHILLFYFRK 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,833
Number of Sequences: 438
Number of extensions: 2067
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)