Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L21
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    29   0.064
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    25   1.0  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    25   1.8  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    24   3.2  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    23   7.4  

>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 29.5 bits (63), Expect = 0.064
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 135 KPPTLDPNEWWGPNELN 185
           +P  LDPN WW PN L+
Sbjct: 315 EPEGLDPNSWWYPNGLS 331


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 24  RLLHKLYLYILMAKLILGLAVVAIAISVWY 113
           R+LH + LYI     + G+A +A  + ++Y
Sbjct: 226 RVLHAVALYIPRVGYVQGMASIAATLLIYY 255


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 166 HHSLGSRVGGFDGPQINIYHTLIAM 92
           H  L ++ G  D  Q   YH LIA+
Sbjct: 169 HWELAAKQGSLDAHQFLAYHNLIAL 193


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 142 GGFDGPQINIYHTLIAMATTANPSINFAMRIY 47
           G F+ P  N+ H+L   +T +N S     RIY
Sbjct: 114 GSFNLPNSNMSHSLNGDSTASNSSTLTPNRIY 145


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 30  LHKLYLYILMAKLILGLAVVAIAISVWYMLICGPSKPPTLDP 155
           L +L L     K+++ L++ A+ +S+   L     +PPTLDP
Sbjct: 225 LIRLMLEAFKDKVLILLSIAAV-VSLALGLYQTFGQPPTLDP 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 882,983
Number of Sequences: 5004
Number of extensions: 14878
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)