Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L21
         (196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258...    31   0.13 
08_02_1506 - 27585894-27586467,27586923-27587551,27591026-27591391     27   1.6  
07_03_1203 - 24848342-24848885,24849199-24849204,24849648-248499...    27   2.8  
12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976           26   3.7  
05_04_0227 - 19219705-19220002,19220146-19220558                       26   3.7  
07_01_0153 - 1092242-1092285,1092710-1092865,1093004-1093754           26   4.9  
06_01_0161 + 1208962-1209153,1209198-1209260,1209390-1209452           26   4.9  
08_02_1022 + 23707993-23708528,23708620-23708706,23708807-237088...    25   6.4  
03_02_0251 - 6821612-6823405,6823738-6823878                           25   6.4  
11_03_0067 - 9535565-9536157,9536446-9536757,9536948-9537212,953...    25   8.5  
06_03_0955 + 26293201-26293296,26293403-26293543                       25   8.5  
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024...    25   8.5  

>03_05_0961 -
           29224548-29225125,29225286-29225308,29225736-29225864,
           29226533-29228217
          Length = 804

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 12  SKNRRLLHKLYLYILMAKLILGLAVVAIAISVWYMLICGPSK 137
           S  R+  HK   YIL+  +  G+ +VA+  ++ Y L+C  S+
Sbjct: 332 SPGRKKGHKNLKYILIGAICGGVLLVAVIAAILYCLVCSGSR 373


>08_02_1506 - 27585894-27586467,27586923-27587551,27591026-27591391
          Length = 522

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 27  LLHKLYLYILMAKLILGLAVVAIAISV-WYMLICG 128
           L H    ++L+  L +GL  +A+A++V W++++ G
Sbjct: 229 LFHVALTWLLLVPLRMGLVGLAVALNVSWWLVVLG 263


>07_03_1203 -
           24848342-24848885,24849199-24849204,24849648-24849947,
           24852725-24853047,24853076-24853255
          Length = 450

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 93  IAISVWYMLICGPSKPPTLDPNEW 164
           +AIS+W+ + C  +K  +L  ++W
Sbjct: 275 MAISLWHFMNCSKAKTSSLSDDQW 298


>12_01_0455 + 3582658-3583158,3584686-3584859,3585407-3585976
          Length = 414

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 184 FSSFGPHHSLGSRVGGFDGPQI 119
           F S  PHHS G  +   DGP +
Sbjct: 247 FLSLVPHHSFGKCLNNVDGPDM 268


>05_04_0227 - 19219705-19220002,19220146-19220558
          Length = 236

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 64  FAMRIYKYSLCNKRLFLLTLV 2
           +A RI+KYS C+   F+L L+
Sbjct: 82  YAERIFKYSECSPSCFVLALI 102


>07_01_0153 - 1092242-1092285,1092710-1092865,1093004-1093754
          Length = 316

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 129 PSKPPTLDPNEWW 167
           P  PP +DP  WW
Sbjct: 86  PFSPPAIDPPNWW 98


>06_01_0161 + 1208962-1209153,1209198-1209260,1209390-1209452
          Length = 105

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +2

Query: 101 KRMVYVDLWPIKTS 142
           +R++ +DLWPI+TS
Sbjct: 38  RRLISLDLWPIRTS 51


>08_02_1022 +
           23707993-23708528,23708620-23708706,23708807-23708863,
           23708955-23709261,23709545-23709631,23709720-23709767
          Length = 373

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 30  LHKLYLYILMAKLILG-LAVVAIAISVWYMLICG 128
           LH +  Y+L+  L LG L  VA A   W++++ G
Sbjct: 106 LHLVITYLLVNTLHLGLLGAVAAANVAWWIVVLG 139


>03_02_0251 - 6821612-6823405,6823738-6823878
          Length = 644

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +3

Query: 27  LLHKLYLYILMAKLILGLAVVAIAISV 107
           LLH    Y+L+ +L +G+A VA+A+++
Sbjct: 214 LLHGPINYLLVVRLRMGVAGVALAVAL 240


>11_03_0067 -
           9535565-9536157,9536446-9536757,9536948-9537212,
           9537810-9538048,9538400-9538568,9539216-9539410,
           9539649-9539766,9542140-9542315
          Length = 688

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 154 GSRVGGFDGPQINIYHTLIAMATTANPS 71
           G  VGG +  ++++Y   +A AT+A+P+
Sbjct: 22  GRSVGGQEARRLHLYCRAVAGATSADPA 49


>06_03_0955 + 26293201-26293296,26293403-26293543
          Length = 78

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 48  YILMAKLILGLAVVAIAISVWYMLICGPSKPPTLD 152
           +++ + L     V  I  SVW +++  P +PP +D
Sbjct: 35  FVVSSALTALFYVPGIVYSVWVVILKTPPEPPGID 69


>02_05_0497 -
           29502012-29502101,29502128-29502197,29502302-29502411,
           29502530-29502641,29503341-29503498,29503592-29503807,
           29504127-29504354,29504722-29504801,29504886-29505056,
           29505179-29505281,29505369-29505551,29506313-29506813,
           29506935-29507100,29507517-29507566,29508047-29508127,
           29508291-29508398,29508874-29508939,29509053-29509109,
           29509442-29509507,29509917-29510006,29510850-29510975,
           29511681-29511717,29512192-29512250,29512562-29512615,
           29513294-29513428,29513542-29513612,29513720-29513957
          Length = 1141

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 144 TLDPNEWWGPNELNTKN 194
           T+D +EW+ P +L T+N
Sbjct: 473 TIDRHEWYAPPQLYTRN 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,056,386
Number of Sequences: 37544
Number of extensions: 101759
Number of successful extensions: 267
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)