Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L21
(196 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical... 30 0.26
Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical pr... 29 0.60
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 0.60
Z82284-4|CAB05288.1| 258|Caenorhabditis elegans Hypothetical pr... 26 4.3
L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of ... 26 4.3
U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 25 7.4
AL032655-5|CAA21723.1| 360|Caenorhabditis elegans Hypothetical ... 25 7.4
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 25 7.4
U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical pr... 25 9.8
>AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical
protein Y38H6C.17 protein.
Length = 454
Score = 29.9 bits (64), Expect = 0.26
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 6 RVSKNRRLLHKLYLYILMAKLILGLAVVAIAI 101
+VS+NR+L+HK+ Y L L+L +A+A+
Sbjct: 344 KVSENRKLIHKILPYALRLSLMLVSLSLALAV 375
>Z81100-1|CAB03194.1| 331|Caenorhabditis elegans Hypothetical
protein K08G2.7 protein.
Length = 331
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 112 YHTLIAMATTANPSINFAMRIYKYSLCNKR 23
YHT+ A++TT + ++ + Y LCNKR
Sbjct: 254 YHTMKAISTTRDMYVSIFVIQLSYILCNKR 283
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 132 SKPPTLDPNEWWGPNELNTKN 194
+KPPT PN W G N+L T N
Sbjct: 25 AKPPT-SPNIWLGSNDLKTSN 44
>Z82284-4|CAB05288.1| 258|Caenorhabditis elegans Hypothetical
protein T27E7.5 protein.
Length = 258
Score = 25.8 bits (54), Expect = 4.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 60 AKLILGLAVVAIAISVWYMLIC 125
AK+++G +AI +W + IC
Sbjct: 24 AKIVVGTVFIAIITGIWLVYIC 45
>L12018-5|AAU87822.1| 557|Caenorhabditis elegans Twik family of
potassium channelsprotein 7 protein.
Length = 557
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 42 YLYILMAKLILGLAVVAIAISV 107
Y+YI++ +ILGLA+ + I +
Sbjct: 423 YMYIILLYIILGLAITTMCIDL 444
>U41264-7|AAA82427.2| 819|Caenorhabditis elegans Hypothetical
protein F10E7.4 protein.
Length = 819
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 121 INIYHTLIAMATTANPSINFAMRIYKYSLC 32
+N YH +++AT PS ++ + + +LC
Sbjct: 297 VNKYHHFVSLATMFGPSPDWCVGLSSVNLC 326
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 187 VFSSFGPHHSLGSRVGGFDGPQIN 116
VF+ G +LG V GF PQIN
Sbjct: 1559 VFAKEGEEVTLGCPVSGFPVPQIN 1582
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 187 VFSSFGPHHSLGSRVGGFDGPQIN 116
VF+ G +LG V GF PQIN
Sbjct: 1559 VFAKEGEEVTLGCPVSGFPVPQIN 1582
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 187 VFSSFGPHHSLGSRVGGFDGPQIN 116
VF+ G +LG V GF PQIN
Sbjct: 1559 VFAKEGEEVTLGCPVSGFPVPQIN 1582
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 187 VFSSFGPHHSLGSRVGGFDGPQIN 116
VF+ G +LG V GF PQIN
Sbjct: 1559 VFAKEGEEVTLGCPVSGFPVPQIN 1582
>AL032655-5|CAA21723.1| 360|Caenorhabditis elegans Hypothetical
protein Y6B3B.10 protein.
Length = 360
Score = 25.0 bits (52), Expect = 7.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 130 GPQINIYHTLIAMATTANPSI 68
GP+ NI H I +TANP +
Sbjct: 3 GPEYNITHPSIYRTSTANPIV 23
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 25.0 bits (52), Expect = 7.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 187 VFSSFGPHHSLGSRVGGFDGPQIN 116
VF+ G +LG V GF PQIN
Sbjct: 1559 VFAKEGEEVTLGCPVSGFPVPQIN 1582
>U53155-4|AAC48265.1| 619|Caenorhabditis elegans Hypothetical
protein ZC513.3 protein.
Length = 619
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 33 HKLYLYILMAKLILGLAVVAIAI 101
HK L +L+ L LGL + AIA+
Sbjct: 593 HKKLLLVLILLLTLGLVIAAIAM 615
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,850,345
Number of Sequences: 27780
Number of extensions: 82144
Number of successful extensions: 250
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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