Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L20
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...    53   5e-09
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   1.0  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    25   1.8  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    24   3.2  
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar...    23   4.2  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    22   9.7  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    22   9.7  

>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score = 53.2 bits (122), Expect = 5e-09
 Identities = 21/30 (70%), Positives = 27/30 (90%), Gaps = 1/30 (3%)
 Frame = +3

Query: 9   PG-RPLELYMCSVLKRQGYGEGIRWLAQYI 95
           PG RP+E++MCSV+ RQGYGEG +WLAQY+
Sbjct: 161 PGIRPIEVFMCSVVLRQGYGEGFKWLAQYV 190


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 107 EFSINVLREPTDTLAVALTLQHR 39
           E++  V  EP DT A+ + L HR
Sbjct: 178 EYATEVSEEPEDTRAIDVVLDHR 200


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 113 TCEFSINVLREPTDTLAVALTLQHRAHIQLQWPPGP 6
           TC   I  L  P + + +AL + H+  + +   P P
Sbjct: 137 TCNLLIMQLEIPLEAVEIALQIAHKHGVDVLMNPAP 172


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 51   RQGYGEGIRWLAQYID 98
            + G  E I WL++YID
Sbjct: 1160 KHGKAEAIEWLSKYID 1175


>SPAC21E11.03c |pcr1|mts2|transcription factor
           Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 110 CEFSINVLREPTD--TLAVALTLQHRAHIQLQWPPG 9
           C+ S+ +    TD  T   AL  QH A+  +Q PPG
Sbjct: 76  CQCSVKIRSVLTDFQTAHNALHSQHMAYRPVQPPPG 111


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 116  MTCEFSINVLREPTDTLAVAL 54
            +TCE  + VLR  T++L   L
Sbjct: 2197 ITCELVMRVLRSNTESLMAVL 2217


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 108 RVLNQCTARANGYPRRSLDASAP 40
           +++N C  RA  YP + +  S P
Sbjct: 57  KIVNACQLRARNYPLQYILKSQP 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 522,895
Number of Sequences: 5004
Number of extensions: 5988
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 22
effective length of database: 2,252,390
effective search space used: 42795410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)