Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L20
         (127 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1068 - 8413269-8413589,8414011-8414262,8417472-8417603,841...    50   2e-07
06_01_0853 + 6486027-6486158,6486561-6486692,6486974-6486978,648...    50   3e-07
01_03_0154 + 13269335-13269463,13269597-13269728,13270704-13271024     48   8e-07
12_02_0764 - 22973675-22973995,22975626-22975757,22977074-22977202     48   1e-06
12_02_0292 + 16979550-16980662,16983249-16983731                       27   2.1  
03_03_0126 + 14665374-14665539,14665790-14666127                       26   4.9  
04_03_0044 - 10103049-10103900                                         25   8.6  
01_01_0327 + 2659822-2660232,2660906-2660959                           25   8.6  

>01_01_1068 -
           8413269-8413589,8414011-8414262,8417472-8417603,
           8417684-8417812
          Length = 277

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 17/27 (62%), Positives = 25/27 (92%)
 Frame = +3

Query: 15  RPLELYMCSVLKRQGYGEGIRWLAQYI 95
           RPLE++MCSV+++ GYGEG +W++QYI
Sbjct: 250 RPLEIFMCSVVRKMGYGEGFKWMSQYI 276


>06_01_0853 +
           6486027-6486158,6486561-6486692,6486974-6486978,
           6487948-6488017,6489456-6489776
          Length = 219

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 17/27 (62%), Positives = 25/27 (92%)
 Frame = +3

Query: 15  RPLELYMCSVLKRQGYGEGIRWLAQYI 95
           RP+E++MCSV++R GYG+G RW++QYI
Sbjct: 192 RPVEVFMCSVVRRMGYGDGFRWMSQYI 218


>01_03_0154 + 13269335-13269463,13269597-13269728,13270704-13271024
          Length = 193

 Score = 48.4 bits (110), Expect = 8e-07
 Identities = 16/27 (59%), Positives = 25/27 (92%)
 Frame = +3

Query: 15  RPLELYMCSVLKRQGYGEGIRWLAQYI 95
           RPLE++MCSV+++ GYG+G +W++QYI
Sbjct: 166 RPLEVFMCSVVRKMGYGDGFKWVSQYI 192


>12_02_0764 - 22973675-22973995,22975626-22975757,22977074-22977202
          Length = 193

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 15/27 (55%), Positives = 25/27 (92%)
 Frame = +3

Query: 15  RPLELYMCSVLKRQGYGEGIRWLAQYI 95
           RPLE++MCS++++ GYG+G +W++QYI
Sbjct: 166 RPLEVFMCSIVRKMGYGDGFKWVSQYI 192


>12_02_0292 + 16979550-16980662,16983249-16983731
          Length = 531

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 123 SHDDLRVLNQCTARANGYPRRSLDASAPSTYTTPMAARA 7
           + DD  V ++CTAR +G P  S +A        P   RA
Sbjct: 384 AEDDGGVADRCTARRDGRPNNSGEADGEVRGDVPAKPRA 422


>03_03_0126 + 14665374-14665539,14665790-14666127
          Length = 167

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 77  TDTLAVALTLQHRAHIQLQWPPGPR 3
           T T   A TL HR   Q  WPP PR
Sbjct: 106 TTTTVAATTLGHR---QCPWPPPPR 127


>04_03_0044 - 10103049-10103900
          Length = 283

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 7   GPGGHWSCIC 36
           G  GHWSCIC
Sbjct: 229 GIWGHWSCIC 238


>01_01_0327 + 2659822-2660232,2660906-2660959
          Length = 154

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 81  ANGYPRRSLDASAPSTYTTPMAA 13
           + GYP+ SL  +AP     PM A
Sbjct: 36  SGGYPKSSLSRTAPHRCAVPMLA 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,849,578
Number of Sequences: 37544
Number of extensions: 50021
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 14,793,348
effective HSP length: 22
effective length of database: 13,967,380
effective search space used: 265380220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)