Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L20
         (127 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58748-6|AAB52968.1|  193|Caenorhabditis elegans Hypothetical pr...    56   5e-09
Z93378-2|CAB07583.1|  184|Caenorhabditis elegans Hypothetical pr...    27   1.4  

>U58748-6|AAB52968.1|  193|Caenorhabditis elegans Hypothetical
           protein ZK180.4 protein.
          Length = 193

 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 21/27 (77%), Positives = 26/27 (96%)
 Frame = +3

Query: 15  RPLELYMCSVLKRQGYGEGIRWLAQYI 95
           RP+E++MCSVL+RQGYGEGIRWL QY+
Sbjct: 167 RPMEVFMCSVLQRQGYGEGIRWLGQYL 193


>Z93378-2|CAB07583.1|  184|Caenorhabditis elegans Hypothetical
           protein F19H8.3 protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 15  RPLELYMCSVLKRQGYGEGIRWLA 86
           R   +  CS LK +G  +GI W+A
Sbjct: 152 RTWHIQACSALKNEGINDGITWVA 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,318
Number of Sequences: 27780
Number of extensions: 37906
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 22
effective length of database: 12,129,038
effective search space used: 230451722
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)