Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L20
         (127 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   0.26 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   0.26 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   3.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   5.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   5.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    19   7.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    19   7.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    19   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    18   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    18   9.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 0.26
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 120 HDDLRVLNQCTARANGYPRRSLDASAPSTYTTPMA 16
           H+D  V+   +    G+PR  LD      Y  P A
Sbjct: 34  HNDPLVVETTSGLVRGFPRTVLDKEVHVFYGIPFA 68


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 0.26
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 120 HDDLRVLNQCTARANGYPRRSLDASAPSTYTTPMA 16
           H+D  V+   +    G+PR  LD      Y  P A
Sbjct: 34  HNDPLVVETTSGLVRGFPRTVLDKEVHVFYGIPFA 68


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 60  SLDASAPSTYTT 25
           S DAS P+T TT
Sbjct: 210 STDASTPATVTT 221


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 10  PGGHWSCICAR 42
           P  H SCIC R
Sbjct: 482 PEIHKSCICVR 492


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 10  PGGHWSCICAR 42
           P  H SCIC R
Sbjct: 482 PEIHKSCICVR 492


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 92  VLREPTDTLAVALTLQHRAHIQ 27
           ++R+P DT++V        H+Q
Sbjct: 373 LVRQPEDTMSVDRMQHCELHMQ 394


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 92  VLREPTDTLAVALTLQHRAHIQ 27
           ++R+P DT++V        H+Q
Sbjct: 373 LVRQPEDTMSVDRMQHCELHMQ 394


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 4/12 (33%), Positives = 10/12 (83%)
 Frame = +3

Query: 12  GRPLELYMCSVL 47
           G+P++++ C V+
Sbjct: 90  GKPVDIWACGVI 101


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 4/12 (33%), Positives = 10/12 (83%)
 Frame = -1

Query: 97  SMYCASQRIPSP 62
           +++C +Q +P+P
Sbjct: 728 ALHCQAQGVPTP 739


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 4/12 (33%), Positives = 10/12 (83%)
 Frame = -1

Query: 97  SMYCASQRIPSP 62
           +++C +Q +P+P
Sbjct: 724 ALHCQAQGVPTP 735


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,498
Number of Sequences: 438
Number of extensions: 454
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 22
effective length of database: 136,707
effective search space used:  2597433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)