SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L19
         (397 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC041168-1|AAH41168.1|  355|Homo sapiens LCN12 protein protein.        31   1.0  
BC020107-1|AAH20107.1| 1156|Homo sapiens nucleoporin 133kDa prot...    31   1.4  
AL160004-2|CAI19048.1| 1156|Homo sapiens nucleoporin 133kDa prot...    31   1.4  
AL139252-2|CAI22354.1| 1156|Homo sapiens nucleoporin 133kDa prot...    31   1.4  
AL121990-3|CAI22011.1| 1156|Homo sapiens nucleoporin 133kDa prot...    31   1.4  
AK022572-1|BAB14106.1|  588|Homo sapiens protein ( Homo sapiens ...    31   1.4  
AK001754-1|BAA91885.1|  775|Homo sapiens protein ( Homo sapiens ...    31   1.4  
AK001676-1|BAA91829.1| 1156|Homo sapiens protein ( Homo sapiens ...    31   1.4  
Z23064-1|CAA80599.1|  391|Homo sapiens hnRNP G protein protein.        30   3.2  
BC010123-1|AAH10123.2|  455|Homo sapiens SH3-domain binding prot...    30   3.2  
BC007435-1|AAH07435.1|  391|Homo sapiens RNA binding motif prote...    30   3.2  
BC006550-1|AAH06550.1|  391|Homo sapiens RNA binding motif prote...    30   3.2  
AY464692-1|AAR28036.1|  391|Homo sapiens heterogeneous nuclear r...    30   3.2  
AL683813-6|CAI39448.1|  391|Homo sapiens RNA binding motif prote...    30   3.2  
AK096015-1|BAC04674.1|  378|Homo sapiens protein ( Homo sapiens ...    30   3.2  
AF266723-1|AAK58567.1|  391|Homo sapiens RBMX protein.                 30   3.2  
AB005047-1|BAA25922.1|  425|Homo sapiens SH3 binding protein pro...    30   3.2  
DQ120650-1|ABB92435.1|  384|Homo sapiens RBM1 protein.                 29   4.2  
BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding doma...    29   4.2  
BC012942-1|AAH12942.1|  390|Homo sapiens RNA binding motif prote...    29   4.2  
AL139416-2|CAI21693.1|  390|Homo sapiens RNA binding motif prote...    29   4.2  
AK093078-1|BAC04045.1|  710|Homo sapiens protein ( Homo sapiens ...    29   4.2  
AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens ...    29   4.2  
AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.     29   4.2  
U88317-1|AAB49305.1|  662|Homo sapiens 15-lipoxygenase protein.        29   5.6  
M23892-1|AAA36182.1|  662|Homo sapiens protein ( Human 15-lipoxy...    29   5.6  
BC029032-1|AAH29032.1|  662|Homo sapiens arachidonate 15-lipoxyg...    29   5.6  
AY505111-1|AAR84235.1|  662|Homo sapiens arachidonate 15-lipoxyg...    29   5.6  
BC018784-1|AAH18784.1|  112|Homo sapiens Unknown (protein for IM...    29   7.4  
X63751-1|CAC69885.1|  411|Homo sapiens putative DNA binding prot...    28   9.7  
BC002422-1|AAH02422.1| 1365|Homo sapiens SON protein protein.          28   9.7  
AY026895-1|AAK07692.1| 2386|Homo sapiens NREBP protein.                28   9.7  
AF380184-1|AAL34502.1| 2426|Homo sapiens SON DNA binding protein...    28   9.7  
AF380183-1|AAL34501.1| 2108|Homo sapiens SON DNA binding protein...    28   9.7  
AF380181-1|AAL34499.1| 2325|Homo sapiens SON DNA binding protein...    28   9.7  
AF380180-1|AAL34498.1| 2303|Homo sapiens SON DNA binding protein...    28   9.7  
AB028942-1|BAA82971.2| 2309|Homo sapiens KIAA1019 protein protein.     28   9.7  

>BC041168-1|AAH41168.1|  355|Homo sapiens LCN12 protein protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 83  PSGPLP-HQVRVRVPRLGAPPPARVAPSPL 169
           P  P+P H +  +VP  G PPPA  AP PL
Sbjct: 257 PGSPVPGHLLPPQVPCPGPPPPAPPAPGPL 286


>BC020107-1|AAH20107.1| 1156|Homo sapiens nucleoporin 133kDa protein.
          Length = 1156

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 27   LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
            LP ++D+L A +L  L S+P   F++K  YE
Sbjct: 1119 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 1149


>AL160004-2|CAI19048.1| 1156|Homo sapiens nucleoporin 133kDa protein.
          Length = 1156

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 27   LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
            LP ++D+L A +L  L S+P   F++K  YE
Sbjct: 1119 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 1149


>AL139252-2|CAI22354.1| 1156|Homo sapiens nucleoporin 133kDa protein.
          Length = 1156

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 27   LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
            LP ++D+L A +L  L S+P   F++K  YE
Sbjct: 1119 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 1149


>AL121990-3|CAI22011.1| 1156|Homo sapiens nucleoporin 133kDa protein.
          Length = 1156

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 27   LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
            LP ++D+L A +L  L S+P   F++K  YE
Sbjct: 1119 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 1149


>AK022572-1|BAB14106.1|  588|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12510 fis, clone NT2RM2001723. ).
          Length = 588

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 27  LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
           LP ++D+L A +L  L S+P   F++K  YE
Sbjct: 551 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 581


>AK001754-1|BAA91885.1|  775|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10892 fis, clone NT2RP4002298. ).
          Length = 775

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 27  LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
           LP ++D+L A +L  L S+P   F++K  YE
Sbjct: 738 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 768


>AK001676-1|BAA91829.1| 1156|Homo sapiens protein ( Homo sapiens cDNA
            FLJ10814 fis, clone NT2RP4000984. ).
          Length = 1156

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 27   LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
            LP ++D+L A +L  L S+P   F++K  YE
Sbjct: 1119 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 1149


>Z23064-1|CAA80599.1|  391|Homo sapiens hnRNP G protein protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
           GPLP + R   PR G PPP R APS  V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173


>BC010123-1|AAH10123.2|  455|Homo sapiens SH3-domain binding protein
           5 (BTK-associated) protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 104 DEEVDPRVGDQLGELRRRQDVLERRQQQL 18
           +EEVDPR+  +L +L +  D + RR+ +L
Sbjct: 38  EEEVDPRIQGELEKLNQSTDDINRRETEL 66


>BC007435-1|AAH07435.1|  391|Homo sapiens RNA binding motif protein,
           X-linked protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
           GPLP + R   PR G PPP R APS  V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173


>BC006550-1|AAH06550.1|  391|Homo sapiens RNA binding motif protein,
           X-linked protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
           GPLP + R   PR G PPP R APS  V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173


>AY464692-1|AAR28036.1|  391|Homo sapiens heterogeneous nuclear
           ribonucleoprotein G protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
           GPLP + R   PR G PPP R APS  V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173


>AL683813-6|CAI39448.1|  391|Homo sapiens RNA binding motif protein,
           X-linked protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
           GPLP + R   PR G PPP R APS  V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173


>AK096015-1|BAC04674.1|  378|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38696 fis, clone KIDNE2001931, highly similar to
           HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G. ).
          Length = 378

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
           GPLP + R   PR G PPP R APS  V S
Sbjct: 132 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 160


>AF266723-1|AAK58567.1|  391|Homo sapiens RBMX protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
           GPLP + R   PR G PPP R APS  V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173


>AB005047-1|BAA25922.1|  425|Homo sapiens SH3 binding protein
           protein.
          Length = 425

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 104 DEEVDPRVGDQLGELRRRQDVLERRQQQL 18
           +EEVDPR+  +L +L +  D + RR+ +L
Sbjct: 8   EEEVDPRIQGELEKLNQSTDDINRRETEL 36


>DQ120650-1|ABB92435.1|  384|Homo sapiens RBM1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
           GPLP + R   PR G P P R APS LV S
Sbjct: 145 GPLPVK-RGPPPRSGGPSPKRSAPSGLVRS 173


>BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding domain
           protein 6 protein.
          Length = 1003

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 77  LRPSGPL-PHQVRVRV-PRLGAPPPARVAPSPLVYSIRSL 190
           L+P GPL   Q+ +++ P  GAPPP   A SPL   ++SL
Sbjct: 762 LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSL 801


>BC012942-1|AAH12942.1|  390|Homo sapiens RNA binding motif protein,
           X-linked-like 1 protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
           GPLP + R   PR G P P R APS LV S
Sbjct: 145 GPLPVK-RGPPPRSGGPSPKRSAPSGLVRS 173


>AL139416-2|CAI21693.1|  390|Homo sapiens RNA binding motif protein,
           X-linked-like 1 protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 89  GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
           GPLP + R   PR G P P R APS LV S
Sbjct: 145 GPLPVK-RGPPPRSGGPSPKRSAPSGLVRS 173


>AK093078-1|BAC04045.1|  710|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35759 fis, clone TESTI2004737. ).
          Length = 710

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 77  LRPSGPL-PHQVRVRV-PRLGAPPPARVAPSPLVYSIRSL 190
           L+P GPL   Q+ +++ P  GAPPP   A SPL   ++SL
Sbjct: 468 LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSL 507


>AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31837 fis, clone NT2RP7000069, weakly similar to
           MUCIN 1 PRECURSOR. ).
          Length = 1003

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 77  LRPSGPL-PHQVRVRV-PRLGAPPPARVAPSPLVYSIRSL 190
           L+P GPL   Q+ +++ P  GAPPP   A SPL   ++SL
Sbjct: 762 LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSL 801


>AB067474-1|BAB67780.1|  967|Homo sapiens KIAA1887 protein protein.
          Length = 967

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 77  LRPSGPL-PHQVRVRV-PRLGAPPPARVAPSPLVYSIRSL 190
           L+P GPL   Q+ +++ P  GAPPP   A SPL   ++SL
Sbjct: 726 LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSL 765


>U88317-1|AAB49305.1|  662|Homo sapiens 15-lipoxygenase protein.
          Length = 662

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 77  LRPSGPL-PHQVRVRVPRLGAPPPARVAPS 163
           L+P G L P  +++++PR G+PPP    P+
Sbjct: 305 LQPDGKLLPMVIQLQLPRTGSPPPPLFLPT 334


>M23892-1|AAA36182.1|  662|Homo sapiens protein ( Human
           15-lipoxygenase mRNA, complete cds. ).
          Length = 662

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 77  LRPSGPL-PHQVRVRVPRLGAPPPARVAPS 163
           L+P G L P  +++++PR G+PPP    P+
Sbjct: 305 LQPDGKLLPMVIQLQLPRTGSPPPPLFLPT 334


>BC029032-1|AAH29032.1|  662|Homo sapiens arachidonate
           15-lipoxygenase protein.
          Length = 662

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 77  LRPSGPL-PHQVRVRVPRLGAPPPARVAPS 163
           L+P G L P  +++++PR G+PPP    P+
Sbjct: 305 LQPDGKLLPMVIQLQLPRTGSPPPPLFLPT 334


>AY505111-1|AAR84235.1|  662|Homo sapiens arachidonate
           15-lipoxygenase protein.
          Length = 662

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 77  LRPSGPL-PHQVRVRVPRLGAPPPARVAPS 163
           L+P G L P  +++++PR G+PPP    P+
Sbjct: 305 LQPDGKLLPMVIQLQLPRTGSPPPPLFLPT 334


>BC018784-1|AAH18784.1|  112|Homo sapiens Unknown (protein for
           IMAGE:4873970) protein.
          Length = 112

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 77  LRPSGPLPHQVRVRVPRLGAPPPARVAPSPLV-YSIR 184
           L PS   PH    R  +LG PPP R  PS LV Y +R
Sbjct: 46  LAPSSARPHFPGPRGTQLGLPPPER--PSTLVLYRVR 80


>X63751-1|CAC69885.1|  411|Homo sapiens putative DNA binding protein
           protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 92  PLPHQVRVRVPRLGAPPPARVAPSPLVYSIRSLLM 196
           P P+++  R  R+ AP P R+AP PL+ + R  +M
Sbjct: 299 PRPYRIAPRSYRI-APRPYRLAPRPLMLASRRSMM 332


>BC002422-1|AAH02422.1| 1365|Homo sapiens SON protein protein.
          Length = 1365

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 92  PLPHQVRVRVPRLGAPPPARVAPSPLVYSIRSLLM 196
           P P+++  R  R+ AP P R+AP PL+ + R  +M
Sbjct: 424 PRPYRIAPRSYRI-APRPYRLAPRPLMLASRRSMM 457


>AY026895-1|AAK07692.1| 2386|Homo sapiens NREBP protein.
          Length = 2386

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 92   PLPHQVRVRVPRLGAPPPARVAPSPLVYSIRSLLM 196
            P P+++  R  R+ AP P R+AP PL+ + R  +M
Sbjct: 927  PRPYRIAPRSYRI-APRPYRLAPRPLMLASRRSMM 960


>AF380184-1|AAL34502.1| 2426|Homo sapiens SON DNA binding protein
            isoform F protein.
          Length = 2426

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 92   PLPHQVRVRVPRLGAPPPARVAPSPLVYSIRSLLM 196
            P P+++  R  R+ AP P R+AP PL+ + R  +M
Sbjct: 967  PRPYRIAPRSYRI-APRPYRLAPRPLMLASRRSMM 1000


>AF380183-1|AAL34501.1| 2108|Homo sapiens SON DNA binding protein
            isoform E protein.
          Length = 2108

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 92   PLPHQVRVRVPRLGAPPPARVAPSPLVYSIRSLLM 196
            P P+++  R  R+ AP P R+AP PL+ + R  +M
Sbjct: 967  PRPYRIAPRSYRI-APRPYRLAPRPLMLASRRSMM 1000


>AF380181-1|AAL34499.1| 2325|Homo sapiens SON DNA binding protein
            isoform C protein.
          Length = 2325

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 92   PLPHQVRVRVPRLGAPPPARVAPSPLVYSIRSLLM 196
            P P+++  R  R+ AP P R+AP PL+ + R  +M
Sbjct: 967  PRPYRIAPRSYRI-APRPYRLAPRPLMLASRRSMM 1000


>AF380180-1|AAL34498.1| 2303|Homo sapiens SON DNA binding protein
            isoform B protein.
          Length = 2303

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 92   PLPHQVRVRVPRLGAPPPARVAPSPLVYSIRSLLM 196
            P P+++  R  R+ AP P R+AP PL+ + R  +M
Sbjct: 967  PRPYRIAPRSYRI-APRPYRLAPRPLMLASRRSMM 1000


>AB028942-1|BAA82971.2| 2309|Homo sapiens KIAA1019 protein protein.
          Length = 2309

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 92   PLPHQVRVRVPRLGAPPPARVAPSPLVYSIRSLLM 196
            P P+++  R  R+ AP P R+AP PL+ + R  +M
Sbjct: 973  PRPYRIAPRSYRI-APRPYRLAPRPLMLASRRSMM 1006


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,194,183
Number of Sequences: 237096
Number of extensions: 788506
Number of successful extensions: 3286
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 3045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3273
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -