Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L19
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.42 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   3.9  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    20   9.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   9.0  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 221 YLHTAV*FFISLIVFVMMTLGMIL 292
           YLHTA  +F++ + F    +G+++
Sbjct: 75  YLHTATNYFVTSLAFADCLVGLVV 98


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +2

Query: 149 RVAPSPLVYSIRSLLMRVVTCFLSYLHTA 235
           R+  + L+ + R  +++ +TC L + H A
Sbjct: 146 RLDEAILIKNERICILKSITCALQFCHNA 174


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 331 SLKKN*NTYYGQY 369
           SLKK+  TY+ QY
Sbjct: 9   SLKKDFGTYFQQY 21


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 113 VRVPRLGAPPPARVAPSPLVYSIRSL 190
           VR P  G  PP+  AP P + ++ ++
Sbjct: 401 VRSPAGGQLPPSAGAPMPPIPNMSNM 426


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 92  PLPHQVRVRVPRLGAPPPARVAPSPLVYSI 181
           P PH    + PR+ +PP      +P  +S+
Sbjct: 184 PDPHDETAKKPRVLSPPLNNNDATPTDFSM 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,621
Number of Sequences: 438
Number of extensions: 2032
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)