Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L18
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   194   8e-51
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   194   8e-51
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    49   4e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.22 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.5  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   6.1  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    25   8.1  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  194 bits (472), Expect = 8e-51
 Identities = 89/115 (77%), Positives = 104/115 (90%)
 Frame = +3

Query: 111 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 290
           K  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP D
Sbjct: 29  KRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHD 88

Query: 291 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEQKERPRS 455
           GCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ E+KE+PR+
Sbjct: 89  GCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143



 Score = 45.2 bits (102), Expect = 5e-06
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +2

Query: 29  MGKPRGIRTARKHVNHRREQRWADKEFK 112
           MGKP G+  ARK  NHRRE+RWAD  +K
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYK 28


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  194 bits (472), Expect = 8e-51
 Identities = 89/115 (77%), Positives = 104/115 (90%)
 Frame = +3

Query: 111 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 290
           K  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP D
Sbjct: 29  KRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHD 88

Query: 291 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEQKERPRS 455
           GCLN ++ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ E+KE+PR+
Sbjct: 89  GCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143



 Score = 45.2 bits (102), Expect = 5e-06
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +2

Query: 29  MGKPRGIRTARKHVNHRREQRWADKEFK 112
           MGKP G+  ARK  NHRRE+RWAD  +K
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYK 28


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +3

Query: 153 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 332
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 333 AGFGRKGHAVGDIPGVRFKVVK 398
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 433  SLYRARSDTFATLTTLNLTPGMSPTAWP 350
            S Y+ + DT+AT  TLN      PT WP
Sbjct: 1151 SKYKIK-DTYATFQTLNYIQNQQPTKWP 1177


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/43 (32%), Positives = 27/43 (62%)
 Frame = -3

Query: 433 SLYRARSDTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSM 305
           ++Y + + +F   T ++++ G S     L P PA++TSSFS++
Sbjct: 161 TIYSSATSSFPYSTDVSVSTGTSTDIVTLPP-PASSTSSFSTI 202


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = -3

Query: 139 AFHLVPMWAFEFLVGPSLLATMIHVLARRANTPRFTHYDSANTILV 2
           +F  VP+  +  L+G SLL ++I+V+ +R    + + Y++ N +LV
Sbjct: 69  SFAQVPLEEYLNLLGHSLLTSIIYVMLKRRFYEQ-SVYNAKNGMLV 113


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 282 PRDGCLNHIEENDEVLVAGFGRKGHAVG 365
           PR+  +++ + ND + + G+G +GH  G
Sbjct: 74  PREKLVDYFK-NDTLAIIGYGSQGHGQG 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,271
Number of Sequences: 5004
Number of extensions: 44094
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)