Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L18
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 206 1e-53
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 206 1e-53
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 119 1e-27
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 4e-07
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 31 0.66
06_02_0197 - 12912818-12913411,12913505-12913732 30 1.1
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 29 2.0
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 29 2.6
06_01_0155 + 1152607-1152721,1152781-1154129 28 3.5
06_01_0152 + 1136202-1136316,1136376-1137583 28 3.5
03_05_0300 - 22894282-22894628,22894713-22894809,22896062-228962... 28 4.6
03_06_0572 + 34812203-34812278,34812485-34813768,34813973-348140... 27 8.1
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392... 27 8.1
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 206 bits (502), Expect = 1e-53
Identities = 93/115 (80%), Positives = 105/115 (91%)
Frame = +3
Query: 111 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 290
K+H+G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP D
Sbjct: 29 KSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPND 87
Query: 291 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEQKERPRS 455
GCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 88 GCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 43.6 bits (98), Expect = 9e-05
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKSPH 121
MGK RG+ RK HRR QRWADK +K H
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSH 31
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 206 bits (502), Expect = 1e-53
Identities = 93/115 (80%), Positives = 105/115 (91%)
Frame = +3
Query: 111 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 290
K+H+G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP D
Sbjct: 199 KSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPND 257
Query: 291 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEQKERPRS 455
GCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KE+KE+PRS
Sbjct: 258 GCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 202 bits (493), Expect = 1e-52
Identities = 91/113 (80%), Positives = 103/113 (91%)
Frame = +3
Query: 111 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 290
K+H+G WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP D
Sbjct: 29 KSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPND 87
Query: 291 GCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEQKERP 449
GCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KE+KE+P
Sbjct: 88 GCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +2
Query: 11 RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKSPH 121
R ++ MGK RG+ RK HRR QRWADK +K H
Sbjct: 165 RCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSH 201
Score = 43.6 bits (98), Expect = 9e-05
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +2
Query: 29 MGKPRGIRTARKHVNHRREQRWADKEFKSPH 121
MGK RG+ RK HRR QRWADK +K H
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSH 31
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 119 bits (286), Expect = 1e-27
Identities = 53/76 (69%), Positives = 61/76 (80%)
Frame = +3
Query: 111 KAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 290
K+H G WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+KNGKK+ AFVP D
Sbjct: 100 KSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPND 158
Query: 291 GCLNHIEENDEVLVAG 338
GCLN I+EN+ V G
Sbjct: 159 GCLNFIKENEVAYVDG 174
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 8 DRVRAIVMG-KPRGIRTARKHVNHRREQRWADKEFKSPH 121
+RVRA G K G+ RK HRR QRWADK +K H
Sbjct: 64 ERVRAWSCGAKTCGMGAGRKLKTHRRNQRWADKAYKKSH 102
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 4e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +3
Query: 318 DEVLVAGFGRKGHAVGDIPGVRFKVVK 398
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 30.7 bits (66), Expect = 0.66
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = -3
Query: 400 TLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 269
TL+ LNL G SP P P P + SM + QP TN V
Sbjct: 254 TLSGLNLNLGSSPAMPPPPPPPPQSILQAMSMPMNQPRSTTNQV 297
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 243 VHEHTYEWLNSAAWLQRQLFRGRCP*HEMHHRR 145
V +H WL +A+ LQR +FR H++HH+R
Sbjct: 186 VDDHCGLWLPAASPLQR-VFRNNAAYHDVHHQR 217
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = -3
Query: 139 AFHLVPMWAFEFLVGPSLLATMIHVLARRANT 44
A H + AFE L P LL M H ARRA+T
Sbjct: 129 ARHELAPAAFEALFAPRLLPVMRHFAARRAST 160
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 1 ARGSCSRYRNG*TSGYSHGAQARESSSRAAMGRQGI 108
A+ +C R +G +GY HG + + SSR + R G+
Sbjct: 182 AKRACYRV-HGMATGYCHGCRCQRCSSRPSRDRDGV 216
>06_01_0155 + 1152607-1152721,1152781-1154129
Length = 487
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 62 CAPCEYPEVYPLR*REHDPR 3
CAPC PE YP + DPR
Sbjct: 177 CAPCPMPECYPQQNALFDPR 196
>06_01_0152 + 1136202-1136316,1136376-1137583
Length = 440
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 62 CAPCEYPEVYPLR*REHDPR 3
CAPC PE YP + DPR
Sbjct: 177 CAPCPMPECYPQQNALFDPR 196
>03_05_0300 -
22894282-22894628,22894713-22894809,22896062-22896200,
22896923-22897230
Length = 296
Score = 27.9 bits (59), Expect = 4.6
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Frame = +3
Query: 93 GPTRNSKAHMGTR-WKANPFGGASHAKGIVLEKVGVEAK--QPNSAIRKCVRVQLIKNGK 263
G RNS + +G P GG+S + + + V + P S+ RV L G+
Sbjct: 52 GLPRNSCSLIGRLDGPVRPCGGSSDERPMAYTFLSVSSSPSSPPSSSPSNFRVTLNLQGE 111
Query: 264 KVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEQKE 443
A V L H+++ND V V+G H V D G + K+ +V+ L +Q +
Sbjct: 112 --LAHVS----LKHLKQNDLVYVSGLLNSYHKV-DPSGEKHTFYKI-HVTDLNYVLDQNQ 163
Query: 444 RPRS 455
RP++
Sbjct: 164 RPQN 167
>03_06_0572 +
34812203-34812278,34812485-34813768,34813973-34814049,
34814299-34814646
Length = 594
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 394 TTLNLTPGMSPTAWPLRPNPATNTSS 317
TT TP M+P P P+P TN ++
Sbjct: 310 TTTTPTPFMNPVTAPTMPSPVTNPAT 335
>03_01_0522 -
3919120-3919696,3919835-3919919,3919955-3919985,
3920078-3920158,3920271-3920338,3920645-3920698,
3921023-3922379
Length = 750
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 439 FCSLYRARS-DTFATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGT 278
FC R+ + TFAT + P ++P WP+ +P S ++W P GT
Sbjct: 637 FCPSVRSLAMQTFATPGPILPGPPVTPMQWPVFISPPQQQLSACAVW---PQAGT 688
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,920,006
Number of Sequences: 37544
Number of extensions: 333533
Number of successful extensions: 953
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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