Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L18
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   223   5e-59
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   5e-07
U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical...    28   4.2  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    27   5.5  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    27   5.5  
Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  223 bits (545), Expect = 5e-59
 Identities = 101/118 (85%), Positives = 111/118 (94%)
 Frame = +3

Query: 102 RNSKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFV 281
           R  KAH+GTRWK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 26  RYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFV 85

Query: 282 PRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEQKERPRS 455
           P DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K +KERPRS
Sbjct: 86  PNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143



 Score = 47.6 bits (108), Expect = 5e-06
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +2

Query: 29  MGKPRGIRTARKHVNHRREQRWADKEFKSPH 121
           MGKP+G+ TARK   HR+EQRW DK +K  H
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAH 31


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +3

Query: 153 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 332
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 333 AGFGRK 350
            G GR+
Sbjct: 129 KG-GRR 133


>U97008-3|AAB52308.1|  380|Caenorhabditis elegans Hypothetical
           protein C03G6.8 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 415 F*LCTKNRRRGPGH 456
           F LC KNRR GPGH
Sbjct: 320 FDLCRKNRRDGPGH 333


>AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical
           protein Y55F3C.3a protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 11  RVRAIVMGKPRGIRTARKHVNHRREQRWADKEFKSPHGYEMEGEP 145
           R R+I+   P+ +      +NH   ++WAD  F+    Y  E  P
Sbjct: 80  RTRSIIKFGPKTLLGRFVRMNHEHRRQWADWYFEEQDEYFFERVP 124


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 270 TAFVPRDGCLNHIEEN 317
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 413 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 276
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 413 RHVCYLNHLKSDSRNVTNSVAFTTESCN*HLIVLLNVVEATITRHE 276
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>Z92782-8|CAB07185.1|  197|Caenorhabditis elegans Hypothetical
           protein F14F8.9 protein.
          Length = 197

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 294 CLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 401
           C N + E+DEV+    G+  H+   +P +  K++++
Sbjct: 129 CKNKLIEHDEVVTLIIGKGNHSRHQVPVIYNKLIEI 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,140,235
Number of Sequences: 27780
Number of extensions: 263027
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)