Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L17
(227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 95 1e-21
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 91 1e-20
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 50 5e-08
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 48 2e-07
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 1.8
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 24 2.4
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 24 3.1
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 23 5.4
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 23 5.4
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 23 5.4
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 23 5.4
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 23 7.2
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 23 7.2
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 23 7.2
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po... 23 7.2
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 23 7.2
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 22 9.5
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 22 9.5
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 94.7 bits (225), Expect = 1e-21
Identities = 40/73 (54%), Positives = 56/73 (76%)
Frame = +2
Query: 8 ADQCTGLHGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAAQVSTAVVEPY 187
AD C+GL GFL+FH LL+ERL+++YGKKS L+F++YPA QVST+VVEPY
Sbjct: 130 ADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPY 189
Query: 188 NSILTSQSSLEHS 226
NS+LT+ ++L++S
Sbjct: 190 NSVLTTHATLDNS 202
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 91.5 bits (217), Expect = 1e-20
Identities = 39/71 (54%), Positives = 54/71 (76%)
Frame = +2
Query: 8 ADQCTGLHGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAAQVSTAVVEPY 187
AD C+GL GFL+FH LL+ERL+++Y KKSKL+F++YPA QVST+VVEPY
Sbjct: 126 ADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPY 185
Query: 188 NSILTSQSSLE 220
NS+LT+ ++L+
Sbjct: 186 NSVLTTHATLD 196
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 49.6 bits (113), Expect = 5e-08
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +2
Query: 5 EADQCTGLHGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAAQVSTAVVEP 184
EA+ C L GF + H LL+ ++ +Y + F++ PA + S VVEP
Sbjct: 123 EAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEP 182
Query: 185 YNSILTSQSSLEHS 226
YN+ L+ +E+S
Sbjct: 183 YNATLSMHQLVENS 196
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 47.6 bits (108), Expect = 2e-07
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 5 EADQCTGLHGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAAQ-VSTAVVE 181
EAD L GF + H L+ERL+ Y KK ++++P +Q VS VV+
Sbjct: 125 EADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQ 184
Query: 182 PYNSIL 199
PYNS+L
Sbjct: 185 PYNSLL 190
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 195 IEL*GSTTAVDTWAAG 148
IEL G+TTA D W+ G
Sbjct: 176 IELVGATTASDIWSVG 191
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 136 VRYLSRSPGVHCCCRALQLYPYKPKQ 213
V ++S+ P H C L + PY K+
Sbjct: 627 VGHISQLPKAHTCFNRLDIPPYNSKE 652
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 118 AVVNGESLHEERSETRTGATTERVEDEESME 26
AVVNG S H + + + + ES+E
Sbjct: 662 AVVNGNSQHHHNRDDASSGLSSNGSENESLE 692
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 23.0 bits (47), Expect = 5.4
Identities = 5/10 (50%), Positives = 8/10 (80%)
Frame = +1
Query: 46 PLVRWWHRFW 75
P V WW+++W
Sbjct: 690 PTVEWWNKWW 699
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 109 NGESLHEERSETRTGATTERVEDE 38
NGE +R+ T +GAT ++++E
Sbjct: 97 NGEQREYKRAITPSGATEYKIDEE 120
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +1
Query: 40 HLPLVRWWHRFWFHFSPHG 96
+L V+W RFW + P G
Sbjct: 91 NLEFVQWAKRFWDQYYPGG 109
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 143 IYPAAQVSTAVVEPYNSILT 202
+Y AAQ +V P+N +LT
Sbjct: 62 VYVAAQAKGILVTPFNILLT 81
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 128 KLEFAIYPAAQVSTAVVEPYNSILTSQSSLE 220
K F YP QV V Y ++ ++ SLE
Sbjct: 4 KNTFVDYPTTQVRKERVHTYRTLTSATPSLE 34
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -2
Query: 115 VVNGESLHEERSETRTGATTERVEDEE 35
+ + S+H S +TG T+ +V +E
Sbjct: 249 ISSSSSIHSTYSSAQTGLTSAKVSSDE 275
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 22.6 bits (46), Expect = 7.2
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -2
Query: 199 KDRVVGLYNSSGHLGCGIDSELQFRLLAVVNGESLHEERSETRTGATTERVEDEESM-EA 23
KD++ L N + HLG + S Q + E + + +++ RV++E + E
Sbjct: 146 KDQIEALQNENSHLGEQVQSAHQAL-------SDIEERKKQHMFASSSSRVKEEILVQEK 198
Query: 22 CALVS 8
ALVS
Sbjct: 199 SALVS 203
>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 116 RSQRRVAP*GEK*NQNRCHH 57
+SQR+++ K ++NRC+H
Sbjct: 148 QSQRKISGSAYKISRNRCYH 167
>SPCC61.02 |spt3||histone acetyltransferase complex subunit
Spt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 307
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 217 QAALACKDRVVGLYNSSGHLG 155
+ ALA KDR+ + NSSG G
Sbjct: 227 EEALAVKDRMDRIQNSSGSGG 247
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 479
Score = 22.2 bits (45), Expect = 9.5
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -3
Query: 48 WKMRNPWRPVHW 13
W M+N WR ++W
Sbjct: 53 WTMQNWWRHLNW 64
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1
Query: 52 VRWWHRFWFHFS 87
V W HRFW +S
Sbjct: 366 VLWDHRFWIKYS 377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,497
Number of Sequences: 5004
Number of extensions: 11835
Number of successful extensions: 47
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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