Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L17
         (227 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   0.36 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   0.36 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   0.36 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   2.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   5.9  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    19   5.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    19   5.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   7.8  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 0.36
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 112 VNGESLHEERSETRTGATTERVEDE 38
           V+ E+ H ERS  R+ A    ++DE
Sbjct: 254 VSSETNHNERSTPRSHAKPSLIDDE 278


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 0.36
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 112 VNGESLHEERSETRTGATTERVEDE 38
           V+ E+ H ERS  R+ A    ++DE
Sbjct: 254 VSSETNHNERSTPRSHAKPSLIDDE 278


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.4 bits (48), Expect = 0.36
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 112 VNGESLHEERSETRTGATTERVEDE 38
           V+ E+ H ERS  R+ A    ++DE
Sbjct: 254 VSSETNHNERSTPRSHAKPSLIDDE 278


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 2.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 136 VRYLSRSPGVHCCCRALQLYP 198
           V+Y +R   +  C    QLYP
Sbjct: 104 VKYSARMHAIIACQMEFQLYP 124


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 91  EERSETRTGATTE 53
           +E+ + RTG TTE
Sbjct: 376 KEKCDRRTGKTTE 388


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 91  EERSETRTGATTE 53
           +E+ + RTG TTE
Sbjct: 87  KEKCDRRTGKTTE 99


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -2

Query: 220 FQAALACKDRVVG 182
           F+  + CK R++G
Sbjct: 339 FKQTICCKTRIIG 351


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 149 PAAQVSTAVVEPYNSILTSQSS 214
           PA+Q ++   EP + +  S+SS
Sbjct: 887 PASQATSVKAEPGSIMAMSESS 908


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 7.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 140 AIYPAAQVSTAVVEPYNSIL 199
           A+ P+ +V    ++ YNSIL
Sbjct: 651 AMGPSERVHVTNMDQYNSIL 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,170
Number of Sequences: 438
Number of extensions: 1007
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3659655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)