Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L16
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    28   0.56 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   4.0  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    24   9.1  

>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
 Frame = +3

Query: 228 YTEMFSPFKHMGLWEYCFDKFR------FPSYQLDKLFSGCHYIFSHEYYVIREWLLPGW 389
           YT+M + + H+GL    +D+F         S QLD+ ++  ++    + YVIRE  +P  
Sbjct: 290 YTKMLNEWIHLGLVNDPYDEFMIKIHKGITSMQLDEDYTDEYW---EKRYVIREDQVPPQ 346

Query: 390 LMAVQSFVTLA 422
           L+ +Q+ V  A
Sbjct: 347 LLDLQNKVLFA 357


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 98  YSYDCRRQ*VS*SFQCYSC 154
           YSY CR +     +QCYSC
Sbjct: 404 YSYICRSRSCPSKYQCYSC 422


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 249 FKHMGLWEYCFDKFRFPSYQLD 314
           F+  G WE  FD F FP+  +D
Sbjct: 375 FRGPGNWEDHFDPFHFPNILID 396


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 235 KCFPHLNIWACGSTVLINFAFHPISLINYFLDATIFLAMSI 357
           KCF  L I  C STV +  + H ++  N++ +  I L  S+
Sbjct: 60  KCF--LYILRCMSTVSLLSSAHKMNCCNFYSNYNILLVSSL 98


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 195 LSFAGPYWIESYTEMFSPFKHMGLWEYCF 281
           + F   +W   +  + +   HM L EYCF
Sbjct: 239 MRFNTMFWKPEFLPLDNSVAHMSLIEYCF 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,099
Number of Sequences: 5004
Number of extensions: 39059
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)