Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L16
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0725 + 31508156-31508277,31508950-31509118,31509311-315094...    28   3.9  
02_02_0088 - 6655493-6655601,6656057-6656259,6656382-6656594,665...    27   5.1  
05_04_0203 + 19016547-19016860,19017020-19017169,19017946-190180...    27   6.8  
04_04_1475 + 33856351-33856582,33857614-33857781,33858156-338582...    27   9.0  

>01_06_0725 +
           31508156-31508277,31508950-31509118,31509311-31509406,
           31510037-31510097,31510387-31510451,31511104-31511178,
           31511276-31511351,31512140-31512303,31512398-31512421
          Length = 283

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 164 HYICGGTIPAAFICWPILDRIIHRNVFPI*TYGLVGVLF 280
           +Y  G +IP+ F+ W + D I HR      T   V +LF
Sbjct: 218 YYFIGSSIPSGFVLWVMKD-IPHRQTVERPTQSRVVILF 255


>02_02_0088 -
           6655493-6655601,6656057-6656259,6656382-6656594,
           6656683-6656792,6656878-6656981,6657076-6657245,
           6657337-6657501,6657584-6657702,6657853-6657940,
           6658035-6658140,6658235-6658323,6658461-6658604,
           6658715-6658807,6658906-6658972,6659116-6659228,
           6659306-6659401,6659524-6659724
          Length = 729

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 300 SYQLDKLFSGCHYIFSHEYYVIREWLLPG 386
           +Y  DK  S C  +    Y+V R WL PG
Sbjct: 677 TYHEDKCRSNCGDLSQRWYHVPRSWLKPG 705


>05_04_0203 +
           19016547-19016860,19017020-19017169,19017946-19018081,
           19018222-19018323,19018556-19018675,19018800-19018880,
           19019041-19019381,19020296-19020589,19020701-19021025,
           19021167-19021400,19021506-19021760
          Length = 783

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 149 SCWS*HYICGGTIPAAFICWPILDRII 229
           S W  HY+C G    AFI +P+ D ++
Sbjct: 678 SIWF-HYVCKGRFEPAFIKFPLQDAMV 703


>04_04_1475 +
           33856351-33856582,33857614-33857781,33858156-33858261,
           33858391-33858442,33858525-33858642,33858736-33858766,
           33858962-33858985,33859075-33859199,33860087-33860168,
           33860319-33860441,33860539-33860592,33860669-33860738,
           33861276-33861309,33861824-33862170
          Length = 521

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 214 YGPANESSRNSPATYVMLAPTRVALEALGYSLSAAVITVEISTSSI 77
           YGP  + S  +P    +L    V     GY LSA V+   I++  +
Sbjct: 348 YGPNGQKSSANPKKVDILEGMHVISVGCGYGLSAIVVDRSIASDRL 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,372,399
Number of Sequences: 37544
Number of extensions: 242089
Number of successful extensions: 525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)