Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L16
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical...    29   2.0  
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct...    29   2.0  
Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z82278-8|CAB05251.2|  312|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z99283-5|CAE46680.1|  308|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z99283-4|CAB16534.1|  342|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z82094-2|CAB05023.2|  279|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical ...    27   6.1  
AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity...    27   6.1  
AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19c protein.
          Length = 1131

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -1

Query: 360 HNTHG*KYSGIQKIIYQADRMESEIYQNSTPTSPYV*MGKTFLCMILSSMGQQMKAAG 187
           H+T    YS    + YQ D   +++ Q   P +P   MG     + L  + QQ  ++G
Sbjct: 673 HSTAARDYSDFDALFYQNDARATDVLQQFQPQAPAGPMGHLGQQVQLRMINQQRPSSG 730


>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1c protein.
          Length = 1131

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -1

Query: 360 HNTHG*KYSGIQKIIYQADRMESEIYQNSTPTSPYV*MGKTFLCMILSSMGQQMKAAG 187
           H+T    YS    + YQ D   +++ Q   P +P   MG     + L  + QQ  ++G
Sbjct: 673 HSTAARDYSDFDALFYQNDARATDVLQQFQPQAPAGPMGHLGQQVQLRMINQQRPSSG 730


>Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical
           protein F44F1.4 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 109 VITVEISTSSIGT-NYPIYLRHLNKTDKIYC 20
           V  V  +T S  T NY IY    N T+K+YC
Sbjct: 246 VQVVSKTTGSYSTYNYTIYTGKFNNTNKVYC 276


>Z82278-8|CAB05251.2|  312|Caenorhabditis elegans Hypothetical
           protein M162.8 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 213 YWIESYTEMFSPFKHMGLWEYCFDKFRFP 299
           YWI  ++E +   ++ GL  YC + F+ P
Sbjct: 73  YWIHLHSECWCSTRNTGLGGYCTNNFKNP 101


>Z68880-6|CAA93092.1|  308|Caenorhabditis elegans Hypothetical
           protein T14G10.6 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 202 LLAHTG*NHTQKCFPHLNIWACGSTVLINFAFHPISLI 315
           ++AHT   +T+ C P L +W   + +L+  +   I++I
Sbjct: 245 VMAHTASIYTEGCLPKLQLWLNNNMLLVAVSMVIIAII 282


>AL117206-6|CAB60450.1|  734|Caenorhabditis elegans Hypothetical
           protein Y67A10A.9 protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
 Frame = +3

Query: 105 MTAADNEYPKASNATLVGASITY--VAGLFLLLSFAGPYWIESYTEMFSPFKHMGLWEYC 278
           M  A +   K S  T +    T   +A L  LL    P W +   E      H GLW  C
Sbjct: 1   MIDAGSSSTKCSRKTALAIHFTLSLIAFLLCLLGLISPSWQQVNLENGRTEHHHGLWLDC 60

Query: 279 FDKFRF 296
              F F
Sbjct: 61  KRDFSF 66


>Z99283-5|CAE46680.1|  308|Caenorhabditis elegans Hypothetical
           protein Y70C5C.6b protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 210 PYWIESYTEMFSPFKHMGLWE 272
           PYW   YT+M  P   MGL E
Sbjct: 192 PYWDYYYTKMILPISSMGLEE 212


>Z99283-4|CAB16534.1|  342|Caenorhabditis elegans Hypothetical
           protein Y70C5C.6a protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 210 PYWIESYTEMFSPFKHMGLWE 272
           PYW   YT+M  P   MGL E
Sbjct: 226 PYWDYYYTKMILPISSMGLEE 246


>Z82094-2|CAB05023.2|  279|Caenorhabditis elegans Hypothetical
           protein ZK525.2 protein.
          Length = 279

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 171 YVAGLFLLLSFAGPYWIESYTEMFSPFKHMGLWEYCFDKFRFPSY 305
           + AG F   SFA   W+ +Y+   +    MGL E C     +P Y
Sbjct: 117 FTAGYFAF-SFARTIWLRAYSTTDAHSYVMGLMESCGFNHPYPIY 160


>Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical
           protein C48D1.3 protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 153 VGASITYVAGLFLLLSFAGPYWIESYTEMFSPF-KHMGLW 269
           + AS+T  A + +  +F G Y+  +YT++   F   +GLW
Sbjct: 162 MNASVTLSACIAVFYTFTGGYYAVAYTDVVQLFCIFVGLW 201


>AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical
           protein Y73C8C.3 protein.
          Length = 826

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 300 SYQLDKLFSGCHYIFSHEYYVIREWLLP 383
           S Q  K   G  Y++ H+Y+VI + ++P
Sbjct: 92  SPQYLKSMKGSTYVYKHDYFVILQGMIP 119


>AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity
           choline transporterCHO-1 protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 153 VGASITYVAGLFLLLSFAGPYWIESYTEMFSPF-KHMGLW 269
           + AS+T  A + +  +F G Y+  +YT++   F   +GLW
Sbjct: 162 MNASVTLSACIAVFYTFTGGYYAVAYTDVVQLFCIFVGLW 201


>AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2b protein.
          Length = 410

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 117 DNEYPKASNATLVGASITYVAGLFLLLSFAGPYWIESYTEM 239
           D +Y K   A  V  ++  ++ +F+   F G +W +S   M
Sbjct: 92  DEKYQKGRRAEKVLWAVAALSAVFIAAEFVGGFWAQSLAIM 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,621,368
Number of Sequences: 27780
Number of extensions: 217366
Number of successful extensions: 579
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)