Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L15
         (224 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    38   0.008
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    38   0.008
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    38   0.008
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    38   0.008
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    38   0.008
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                37   0.010
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                33   0.22 

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 155 MASKAELACVYSALILVDDDVAV 223
           MAS +ELAC+YSALIL DD+V V
Sbjct: 1   MASVSELACIYSALILHDDEVTV 23


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 155 MASKAELACVYSALILVDDDVAV 223
           MAS +ELAC+YSALIL DD+V V
Sbjct: 1   MASVSELACIYSALILHDDEVTV 23


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 155 MASKAELACVYSALILVDDDVAV 223
           MAS +ELAC+YSALIL DD+V V
Sbjct: 1   MASVSELACIYSALILHDDEVTV 23


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 155 MASKAELACVYSALILVDDDVAV 223
           MAS +ELAC+YSALIL DD+V V
Sbjct: 1   MASVSELACIYSALILHDDEVTV 23


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 155 MASKAELACVYSALILVDDDVAV 223
           MAS +ELAC+YSALIL DD+V V
Sbjct: 1   MASVSELACIYSALILHDDEVTV 23


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +2

Query: 155 MASKAELACVYSALILVDDDVAV 223
           MAS +ELAC+YSAL+L DD+V V
Sbjct: 1   MASVSELACIYSALVLHDDEVTV 23


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = +2

Query: 155 MASKAELACVYSALILVDDDVAV 223
           MAS +ELA +YSALIL DD+V V
Sbjct: 1   MASVSELARIYSALILHDDEVTV 23


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,709,587
Number of Sequences: 237096
Number of extensions: 363015
Number of successful extensions: 357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 76,859,062
effective HSP length: 53
effective length of database: 64,292,974
effective search space used: 1350152454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)