Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_L14
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 31 0.048
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 27 0.78
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 1.0
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 25 2.4
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 25 3.2
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 3.2
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 25 4.2
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 24 7.3
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 24 7.3
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 24 7.3
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 24 7.3
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 24 7.3
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|... 24 7.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 24 7.3
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 23 9.6
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 23 9.6
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 23 9.6
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 23 9.6
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 31.1 bits (67), Expect = 0.048
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 26 GARPPAWPTDSISTPEVLSYVEQLEK-EKCSHTTLKSKEWSAHEPGPDLESSCSKESPVE 202
G P TD + P+ ++ Q EK KC + +++EW + + + PV
Sbjct: 22 GYNPVIRLTDRTTQPDPSQHIYQEEKISKCEGLSYRAREWLLLSSNSNARVAIALAEPVL 81
Query: 203 YEPITPKSESHAE 241
Y P SE +E
Sbjct: 82 YLPGATSSEIQSE 94
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 27.1 bits (57), Expect = 0.78
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 198 LNMSPSLPKANLMQSLTMMMFNLIQAKGDMTTAMIQMKHTPL 323
L PSL + + ++ + + + N + K +M TA I ++H P+
Sbjct: 336 LQPCPSLAEWDALRKVWLFITNKLLNKDNMYTAWIPLRHPPI 377
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 1.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 23 VGARPPAWPTDSISTPEVLSYVEQLEKEKCSHTTLKSKEWSAHEPGPD 166
V +PP DS E L V ++ K + +T+ SK+ S+H P+
Sbjct: 616 VSPKPPTEGVDSEVNGESLVQVNKVLKSEDDNTSEASKDPSSHVKSPE 663
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 2.4
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +2
Query: 32 RPPAWPTDSISTPEVLSYVEQLEKEKCSHTTLKSKEWSAHEPGPDLESSCSKESPVEYEP 211
R P P + + E L L E L + +EP P E++C KESP+ E
Sbjct: 105 REPPLPNEPVPE-EPLPGEPPLPDEPVPEEPLPGEPPLPNEPVP--ETNCHKESPLSDET 161
Query: 212 ITPKSES 232
++ S++
Sbjct: 162 VSETSKN 168
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 3.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 289 VMSPFAWMRLNIIIVRLCMRFAF 221
V W IIIV LC RFA+
Sbjct: 77 VCGTIPWKAFIIIIVELCERFAY 99
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 3.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 177 LVPKSHQLNMSPSLPKANLMQSLTMMMFNLIQAKGD 284
++PK + L K +++L +++F I +KGD
Sbjct: 88 MLPKETNVKSCEDLSKTGEIKALDIVLFKAITSKGD 123
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 24.6 bits (51), Expect = 4.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -1
Query: 311 FHLNHRCRHVSFCLDEVKHHHCQTLHEIRF 222
FH N+ +F L + HC TLHE F
Sbjct: 560 FHTNNTYGARAFSLLDAFVRHCITLHEAGF 589
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 23.8 bits (49), Expect = 7.3
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 71 EVLSYVEQLE--KEKCSHTTLKSKEWSAHEPGPDLESSCSKESPVE 202
E L EQ K + + + E A+ P P +E ++ SPVE
Sbjct: 405 EQLESAEQTNGVKPETQAQNMSASESQANSPAPPVEEGNTQPSPVE 450
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 23.8 bits (49), Expect = 7.3
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 170 ESSCSKESPVEYEPITPKSESHAESDNDDV*PHPSKRRHXXXXXXXETYTP 322
E + KE ++Y T HA + D + PS + + TYTP
Sbjct: 47 EKTAKKEIDLQYILTTHHHYDHAGGNEDILSYFPSLKVYGGKNASGVTYTP 97
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 23.8 bits (49), Expect = 7.3
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1
Query: 329 LCKGCMFHLNHRCRHVSFCL 270
LC C+ +L+H C ++ C+
Sbjct: 200 LCDNCVEYLDHHCIWLNTCI 219
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 23.8 bits (49), Expect = 7.3
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 89 EQLEKEKCSHTTLKSKEWSAHEPGPDLESSCSKESPVEYEPITPKSESHAESDND 253
E E+E+ T + KE S+ E D ESS S + SES + S+++
Sbjct: 183 ESEEEEEVVEKTEEKKEGSS-ESSSDSESSSDSSSESGDSDSSSDSESESSSEDE 236
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 23.8 bits (49), Expect = 7.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 53 DSISTPEVLSYVEQLEKEKCSHTTL 127
++ +T L+++ LEKE SHT L
Sbjct: 344 NNATTLAALNHISALEKETISHTDL 368
>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 128 KSKEWSAHEPGPDLESSCSKESPVEY 205
++ EW+ + G L+S+C + PV +
Sbjct: 30 ENSEWNVPKYGNVLDSNCQGQKPVTF 55
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 23.8 bits (49), Expect = 7.3
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 198 LNMSPSLPKANLMQSLTMMMFNLIQAKGDMTTAMIQMKHTPLTQNKL 338
L SP+ P + ++T +L+Q T+A K PLT L
Sbjct: 71 LTSSPTSPDSCTFGNMTFQWTSLLQDVFSGTSAFAIFKRFPLTDTPL 117
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 23.4 bits (48), Expect = 9.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 180 VPKSHQLNMSPSLPKANLMQSLTMMMFNLIQAK 278
V +S+Q N+S SLP + + + + L QAK
Sbjct: 173 VDQSYQNNLSHSLPVPMISREINLKKGKLDQAK 205
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 201 STGDSLEQELSKSGPGS*ADHSFD 130
S+GDS +QEL +S P + ++ S D
Sbjct: 356 SSGDSTDQELPQSIPATESETSDD 379
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 23.4 bits (48), Expect = 9.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 129 FKVVCEHFSF 100
FK++CEHF F
Sbjct: 198 FKLICEHFMF 207
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 23.4 bits (48), Expect = 9.6
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +2
Query: 101 KEKCSHTTLKSKEWSAHEPGPDLESSCSKESPV-----EYEPITPKSES-HAESDN 250
K + S + + +WS PD+ S+ S S V P+ ++E+ AESDN
Sbjct: 151 KLRASRSFFRFPKWSRKSWNPDVNSTTSSPSEVGSLDKAGGPLNQQNENLSAESDN 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,032
Number of Sequences: 5004
Number of extensions: 25035
Number of successful extensions: 101
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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