Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_L14
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   2.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.1  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   5.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   9.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 51  QTQSAHQRYLVMSSS*K-RRSVHIQP*SQKNGQLMSQDLT*KALVPKSHQLNMSPSL 218
           QT+  ++  L+     + RR +H  P     G  ++ DLT +A + + H+L + PS+
Sbjct: 142 QTEEMYREMLLEHKKRRARRDIH--PELNTQGIALA-DLTQRAQIGQKHKLLIGPSI 195


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 183 PKSHQLNMSPSLPKANLMQSL 245
           PKS + +   S+PK NL  +L
Sbjct: 356 PKSSESSTGSSIPKLNLSTAL 376


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 4   RGFICRCWSTTTSLA 48
           +G I RCWS  ++ A
Sbjct: 209 KGSIARCWSLDSTAA 223


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 164 DLESSCSKESPVEYEPITPKSESHAES 244
           +L  + S E P E EP+ P +    E+
Sbjct: 28  ELFKAGSAEQPKEQEPLPPVTPPQGEN 54


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 128 SRLYVNTSPFLTARH 84
           S  YVNT PF+ + +
Sbjct: 275 SLYYVNTKPFMKSEY 289


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 45  GLQTQSAHQRYL 80
           GL T +AH R+L
Sbjct: 407 GLHTTTAHNRFL 418


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -1

Query: 119 YVNTSPFLTAR 87
           YVNT+PF+ ++
Sbjct: 275 YVNTAPFMKSQ 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,146
Number of Sequences: 438
Number of extensions: 1551
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)